| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,675,736 – 22,675,829 |
| Length | 93 |
| Max. P | 0.574707 |
| Location | 22,675,736 – 22,675,829 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 84.84 |
| Shannon entropy | 0.25541 |
| G+C content | 0.52853 |
| Mean single sequence MFE | -29.00 |
| Consensus MFE | -20.80 |
| Energy contribution | -23.20 |
| Covariance contribution | 2.40 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22675736 93 + 24543557 CCAAUUGCUGGUCAUUGUCAUUUGGAUCGCAACGGAUUUGAAUGAACAGGGCGAAGGGGCGAACCCCCCGCUAGCUCCAUCACCAUUCCGCCG .........(((..((((((((..((((......))))..)))).))))((.((.(((((.............))))).)).)).....))). ( -27.32, z-score = -0.09, R) >droYak2.chr3L 23143193 88 + 24197627 CCAAUUGCUGGUCAUUGUCAAUUGGAUCGCAGCGAAUUCGAAUGAACUGGGCGAUAAAGAGAGC--CCCACCAGCCCCAUCACAAUUUCG--- ......((((((.....(((.((((((((...)).)))))).)))...((((..........))--)).))))))...............--- ( -20.90, z-score = -0.34, R) >droEre2.scaffold_4784 22325971 87 + 25762168 CCAAUUGCUGGUCAUUGUCAUUUGGAUUGCAGCAAAUUCGAAUGAAUUGCGCGAUAAAGAG-GC--CCCGCCAGCCCCAUCACCAUUCCG--- ......((((((....(((.(((..(((((.((((.(((....))))))))))))..))))-))--...))))))...............--- ( -22.60, z-score = -1.00, R) >droSec1.super_11 2592487 90 + 2888827 CCAAUUGCUGGUCAUUGUCAUUUGGAUCGCAGUGGAUUUGAAUGAAUAGGACGAUGGGGCGAGCACCCCGCUAGCCCCAUCACCAUUCCG--- ..........(((....(((((..((((......))))..)))))....)))((((((((.(((.....))).)))))))).........--- ( -37.10, z-score = -3.55, R) >droSim1.chr3L 21959461 90 + 22553184 CCAAUUGCUGGUCAUUGUCAUUUGGAUCGCAGCGGAUUUGAAUGAAUAGGACGAUGGGGCGAGCACCCCGCUAGCCCCAUCACCAUUCCG--- ..........(((....(((((..((((......))))..)))))....)))((((((((.(((.....))).)))))))).........--- ( -37.10, z-score = -3.50, R) >consensus CCAAUUGCUGGUCAUUGUCAUUUGGAUCGCAGCGGAUUUGAAUGAAUAGGGCGAUGGGGCGAGC_CCCCGCUAGCCCCAUCACCAUUCCG___ ..........(((....(((((((((((......)))))))))))....)))((((((((.(((.....))).))))))))............ (-20.80 = -23.20 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:30 2011