| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,674,115 – 22,674,165 |
| Length | 50 |
| Max. P | 0.565188 |
| Location | 22,674,115 – 22,674,165 |
|---|---|
| Length | 50 |
| Sequences | 10 |
| Columns | 53 |
| Reading direction | forward |
| Mean pairwise identity | 87.26 |
| Shannon entropy | 0.27440 |
| G+C content | 0.33819 |
| Mean single sequence MFE | -8.55 |
| Consensus MFE | -5.81 |
| Energy contribution | -5.64 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.565188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22674115 50 + 24543557 AAAGUAUUUCAAUAUUCCCAGCCAAUGUUGUUCAAUAUUUGCUGUGACUG--- ...............((.((((.((((((....)))))).)))).))...--- ( -9.50, z-score = -2.56, R) >droSim1.chr3L 21957653 50 + 22553184 AAAGUAUUUCAAUAUUCCCAGCCAAUGUUGUUCAAUAUUUGCUGUGACUG--- ...............((.((((.((((((....)))))).)))).))...--- ( -9.50, z-score = -2.56, R) >droSec1.super_11 2590662 50 + 2888827 AAAGUAUUUCAAUAUUCCCAGCCAAUGUUGUUCAAUAUUUGCUGUGACUG--- ...............((.((((.((((((....)))))).)))).))...--- ( -9.50, z-score = -2.56, R) >droEre2.scaffold_4784 22323779 50 + 25762168 AAAGUAUUUCAAUAUUCCCAGCCAAUGUUGUUCAAUAUUUGCUGUGACUG--- ...............((.((((.((((((....)))))).)))).))...--- ( -9.50, z-score = -2.56, R) >droAna3.scaffold_13337 22397089 53 + 23293914 AAAGUAUUUCAAUAUUCCCAGCAAAUAUUGUUCAAUAUUUACAGUGACGACUG .(((((((.(((((((.......)))))))...))))))).((((....)))) ( -7.70, z-score = -1.91, R) >dp4.chrXR_group8 356595 50 + 9212921 AAAGUAUUUCAAUAUUCCCAGCCAAUGUUGUUCAAUAUUUGCUGUGGCUG--- ................((((((.((((((....)))))).)))).))...--- ( -10.70, z-score = -2.24, R) >droPer1.super_96 82996 50 - 202244 AAAGUAUUUCAAUAUUCCCAGCCAAUGUUGUUCAAUAUUUGCUGUGGCUG--- ................((((((.((((((....)))))).)))).))...--- ( -10.70, z-score = -2.24, R) >droWil1.scaffold_180698 4381732 50 - 11422946 AAAGUAUUUCAAUAUUCGCAACCAAUGUUGAUCAAUAUUUGCAGUAAGUG--- .(((((((((((((((.......))))))))..)))))))..........--- ( -6.90, z-score = -1.11, R) >droMoj3.scaffold_6680 2701709 50 - 24764193 AAAGUACUUCAGUAUUCACUGUCAAUGCUGUUUAAUAUUUGCAGAGGUUG--- .........((((....)))).((((.((((.........))))..))))--- ( -5.80, z-score = 0.63, R) >droGri2.scaffold_15110 15119399 50 + 24565398 AAAGUAUUUCAAUAUUCGCAGCCAAUGUUGUUCAAUAUUUGCAAGAGCCC--- .(((((((.(((((((.......)))))))...)))))))((....))..--- ( -5.70, z-score = -0.51, R) >consensus AAAGUAUUUCAAUAUUCCCAGCCAAUGUUGUUCAAUAUUUGCUGUGACUG___ .(((((((.(((((((.......)))))))...)))))))............. ( -5.81 = -5.64 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:29 2011