Locus 8428

Sequence ID dm3.chr3L
Location 22,671,042 – 22,671,136
Length 94
Max. P 0.856070
window11579

overview

Window 9

Location 22,671,042 – 22,671,136
Length 94
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 91.44
Shannon entropy 0.14680
G+C content 0.49813
Mean single sequence MFE -27.90
Consensus MFE -24.78
Energy contribution -24.82
Covariance contribution 0.04
Combinations/Pair 1.12
Mean z-score -1.75
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.93
SVM RNA-class probability 0.856070
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 22671042 94 - 24543557
UAGGUCAAGGGUCCGAGAAAACCAAGACUUGCUCGGACGUGGCCAAGCUGAAGUCCAUAUAUCAGGAUAGUUGUC--AGCAACCGUCUAGUCCACU-
..(((((...(((((((.((........)).))))))).)))))..(((((.((((........)))).....))--)))................- ( -29.10, z-score =  -2.01, R)
>droEre2.scaffold_4784 22320769 95 - 25762168
UAGGUCCAAGGUCCGAGGAAACCAAGAGUCUCUCGGACGUGGCCAAGCUGAAGUCCAUAUAUCAGGAUAGUUGUCAAAGCAACCGUCUGGUCCCU--
.(((......(((((((((.........)).)))))))..(((((..(....((((........)))).(((((....))))).)..))))))))-- ( -28.80, z-score =  -1.64, R)
>droYak2.chr3L 23137220 97 - 24197627
UAGGUCCAAGGUCCGAGAAAACUAAAACUUGCUCGGACGUGGCCAAGCUAAAGUCCAUAUAUCAGGAUACUUGUCAAAGCAACCGUCUAGUCCACUU
..((.(((..(((((((.((........)).))))))).)))))..((((..((((........))))..((((....)))).....))))...... ( -23.40, z-score =  -1.37, R)
>droSec1.super_11 2587594 94 - 2888827
UAGGUCAAGGGUCCGAGAAAACCAAGACUUGCUCGGACGUGGCCAAGCUGAAGUCCAUAUAUCAGGAUAGUUGUC--AGCAACCGUCUAGCCCACU-
..(((((...(((((((.((........)).))))))).)))))..(((((.((((........)))).....))--)))................- ( -29.10, z-score =  -1.85, R)
>droSim1.chr3L 21954589 94 - 22553184
UAGGUCAAGGGUCCGAGAAAACCAAGACUUGCUCGGACGUGGCCAAGCUGAAGUCCAUAUAUCAGGAUAGUUGUC--AGCAACCGUCUAGCCCACU-
..(((((...(((((((.((........)).))))))).)))))..(((((.((((........)))).....))--)))................- ( -29.10, z-score =  -1.85, R)
>consensus
UAGGUCAAGGGUCCGAGAAAACCAAGACUUGCUCGGACGUGGCCAAGCUGAAGUCCAUAUAUCAGGAUAGUUGUC__AGCAACCGUCUAGUCCACU_
..(((((...(((((((..............))))))).)))))..((((..((((........)))).(((((....)))))....))))...... (-24.78 = -24.82 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:28 2011