| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,624,358 – 22,624,473 |
| Length | 115 |
| Max. P | 0.546931 |
| Location | 22,624,358 – 22,624,473 |
|---|---|
| Length | 115 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.03 |
| Shannon entropy | 0.50916 |
| G+C content | 0.43221 |
| Mean single sequence MFE | -22.28 |
| Consensus MFE | -12.96 |
| Energy contribution | -12.74 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.11 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.546931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22624358 115 + 24543557 ---CUCUGGGUCCCUUCCGCCACG-CCACCAUUUGAUCCCCUCCUGCCGUCGUAAUUGUGUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUU ---(((.(((.....)))......-......((..(((......(((..(((((......)))))...)))((((....))))((((((.....)))))))))..)).......))).. ( -20.50, z-score = 0.20, R) >droAna3.scaffold_13337 22338745 119 + 23293914 CCCCUCACCAUUCCCCUAACCCUAACCACCGUCUGCUCACAGCUUCUCUUCGUAAUUGUGUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUU ...(((..(((..................(((.((((....((((...((((((......))))))))))..)))).))).((((((((.....)))))))).......)))..))).. ( -22.60, z-score = -2.73, R) >droEre2.scaffold_4784 22273367 110 + 25762168 -------GCGUUCUUGCCGC-CCG-CCACCAUUGGAUCCCCUCCCGCCAUCGUGAUUGUGUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUU -------..(((.((((...-.((-((((....(((.....)))(((....)))...))).)))....)))))))......((((((((.....))))))))((((......))))... ( -21.60, z-score = -0.12, R) >droYak2.chr3L 23077744 111 + 24197627 -------GCGUUCUUUCCGCACCG-CCACCAUUUGAUCCCCUCCUGCCAUCGUAAUUGUGUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUU -------(((.......)))((((-.((...((..(((......(((..(((((......)))))...)))((((....))))((((((.....)))))))))..))...)).)).)). ( -19.70, z-score = -0.40, R) >droSec1.super_11 2539020 115 + 2888827 ---CUCUGCGUCCCUUCCGCCACG-CCACCAUUUGAUCCCCUCCUGCCGUCGUAAUUGUGUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUU ---(((.((((...(((.......-....((((((.....((..(((..(((((......)))))...))).)))))))).((((((((.....))))))))..)))..)))).))).. ( -21.90, z-score = -1.20, R) >droSim1.chr3L 21905887 115 + 22553184 ---CUCUGCGUCCCUUCCGCCACG-CCACCAUUUGAUCCCCUCCUGCCGUCGUAAUUGUGUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUU ---(((.((((...(((.......-....((((((.....((..(((..(((((......)))))...))).)))))))).((((((((.....))))))))..)))..)))).))).. ( -21.90, z-score = -1.20, R) >droPer1.super_96 26233 107 - 202244 ----------CUGGCCCCGCCCUG-CCCCCCUUUG-CCGUCGACGCCCUCCGUAAUUGUGUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAUAUUUACGUGAUUGAAAUAUGUCGAGUU ----------..(((........)-))...(((((-(..(((((((...........)))).)))...)))))).......((((((((.....))))))))((((......))))... ( -22.30, z-score = -1.48, R) >dp4.chrXR_group8 295354 107 + 9212921 ----------CUGGCCCCGCCCUG-CCCCCCUUUG-CCGUCGACGCCCUCCGUAAUUGUGUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAUAUUUACGUGAUUGAAAUAUGUCGAGUU ----------..(((........)-))...(((((-(..(((((((...........)))).)))...)))))).......((((((((.....))))))))((((......))))... ( -22.30, z-score = -1.48, R) >droWil1.scaffold_180698 7119184 106 + 11422946 -------------ACACAUACACUGUUCGCUCUCACCGGCAGCUGCCCUUCGUAAUUGUGUGCAAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUU -------------...............((((.....(((....))).((((...((((.(((.....)))..))))....((((((((.....)))))))).)))).......)))). ( -20.00, z-score = 0.49, R) >droVir3.scaffold_13049 8104392 101 - 25233164 ------------------CUCUUCUGUGGCUUUCUCCUGCAGUUGGCCAUCAUAAUUGUGUGCAAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGGAAUAUGUCGAGUU ------------------(((....((((((..((.....))..))))))((((.((((.(((.....)))..))))....((((((((.....))))))))......))))..))).. ( -23.00, z-score = -1.17, R) >droMoj3.scaffold_6680 2627791 99 - 24764193 ------------------UUCUCGCACGGCU--CGACUGCAGUUGGUCGUCAUAAUUGUGUGCAAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUU ------------------.........((((--((((.....(..(((.......((((.(((.....)))..))))......((((((.....)))))))))..).....)))))))) ( -25.90, z-score = -1.53, R) >droGri2.scaffold_15110 15059482 109 + 24565398 ----------CACACACACUCGUGUGUAGCUUCCUCCUGCAGUUGGCUGUCGUAAUUGUGUGCAAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUU ----------.((((((....))))))((((..((.....))..))))(.((((.((((.(((.....)))..))))....((((((((.....))))))))......)))).)..... ( -25.70, z-score = -0.67, R) >consensus __________UUCCCUCCGCCCCG_CCACCAUUUGACCGCCGCCGGCCGUCGUAAUUGUGUGCGAAAAGCAAAGCAAAUGUUUACGUAAUAAAUUUACGUGAUUGAAAUAUGUCGAGUU ..................................................((((.((((.(((.....)))..))))....((((((((.....))))))))......))))....... (-12.96 = -12.74 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:19 2011