| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,622,884 – 22,622,979 |
| Length | 95 |
| Max. P | 0.658500 |
| Location | 22,622,884 – 22,622,979 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 77.08 |
| Shannon entropy | 0.42105 |
| G+C content | 0.56373 |
| Mean single sequence MFE | -33.23 |
| Consensus MFE | -15.35 |
| Energy contribution | -16.47 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.658500 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22622884 95 + 24543557 ---------AGUCGGAAAAGUUGCCGCCAGGCCGACUCACACGCGAAUCC-GCCUCCUCCGACGCCCUGUGAAGUGCGCUUUUAGGCGUGCUCCCUUAUAGUUUU ---------.((((((..(((((((....)).))))).....(((....)-))....))))))...((((((((..((((....))))..))...)))))).... ( -33.00, z-score = -2.32, R) >droAna3.scaffold_13337 22337647 104 + 23293914 AGUCGGAAAAGUCGAGGGGACAGCCAGUGGGAAGAACUGGUGGCUAUUCCCACCCACUUGGCUACCUCACAAAGCUCCGUUUUAGGCGUUCUC-UUCAUAGUUCU ....((((..((.((((((((((((((((((......(((.((....)))))))))).)))))..........(((........)))))))))-)).))..)))) ( -31.50, z-score = -0.23, R) >droEre2.scaffold_4784 22270693 95 + 25762168 ---------AGUCGGAGGAGUUGCCGCCAGGCCGACUCCCACGCAAAUCC-GCCUCCUCUGGCGCCAUGUGAAGUGCGCUUUUAGGCGCGCUCCUUUAUAGUUUU ---------....((((((((((((....)).)))))))..((((....(-(((......))))...))))..(((((((....))))))))))........... ( -37.30, z-score = -2.18, R) >droYak2.chr3L 23075576 95 + 24197627 ---------AGUCGGAAGAGUUGCCGCCAGGCUGACUCCCACGCGAAUCC-GCCUUCUCCGACGCCCUGUAAAGUGCGCUUUUAAGCGUGCUCCUUUAUAGUUUU ---------.((((((.((((((((....))).)))))....(((....)-))....))))))...((((((((..((((....))))..))...)))))).... ( -36.10, z-score = -4.03, R) >droSec1.super_11 2537514 95 + 2888827 ---------AGUCGGAAAAGUUGCCGCCAGGCCGACUCCCACGCGAAUCC-GCCUCCUCCGACGCCCUGUGAAGUGCGCUUUUAGGCAGGCUCCUUUAUAGUUUU ---------.((((((..(((((((....)).))))).....(((....)-))....))))))...((((((((.(.((((......)))).))))))))).... ( -30.60, z-score = -1.25, R) >droSim1.chr3L 21903728 95 + 22553184 ---------AGUCGGAAAAGUUGCCGCCAGGCCGACUCCCACGCGAAUCC-GCCUCCUCCGACGCCCUGUGAAGUGCGCUUUUAGGCAAGCUCCUUUAUAGUUUU ---------.((((((..(((((((....)).))))).....(((....)-))....))))))...((((((((.(.((((......)))).))))))))).... ( -30.90, z-score = -2.04, R) >consensus _________AGUCGGAAAAGUUGCCGCCAGGCCGACUCCCACGCGAAUCC_GCCUCCUCCGACGCCCUGUGAAGUGCGCUUUUAGGCGUGCUCCUUUAUAGUUUU ..........((((((..(((((((....))).)))).....((.......))....))))))...(((((((((.((((....)))).)))...)))))).... (-15.35 = -16.47 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:18 2011