| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,156,164 – 6,156,241 |
| Length | 77 |
| Max. P | 0.677273 |
| Location | 6,156,164 – 6,156,241 |
|---|---|
| Length | 77 |
| Sequences | 10 |
| Columns | 78 |
| Reading direction | forward |
| Mean pairwise identity | 69.94 |
| Shannon entropy | 0.65834 |
| G+C content | 0.36348 |
| Mean single sequence MFE | -16.81 |
| Consensus MFE | -5.12 |
| Energy contribution | -5.11 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6156164 77 + 23011544 UACCCUCGUUGAUUCAAUAUUUUGCUUGGGCAAUAAUUGAAUUUAAUAGAUGACUGGG-ACAUUCCUUUGGAAAUGUG ..((((((((((((((((...((((....))))..)))))))).....)))))..)))-(((((((...)).))))). ( -18.90, z-score = -2.40, R) >droSim1.chr2L 5949135 77 + 22036055 UACCCUCGUUGAUUCAAUAUUUUGCUUGGGCAAUAAUUGAAUUUAAUAGAUGGCUGGG-ACAUUCCGUUGGAAAUGUG ..((((((((((((((((...((((....))))..)))))))).....)))))..)))-(((((((...)).))))). ( -18.00, z-score = -1.25, R) >droSec1.super_5 4227165 77 + 5866729 UACCCUCGUUGAUUCAAUAUUUUGCUUGGGCAAUAAUUGAAUUUAAUAGAUGGCUGGG-ACAUUCCAUUGGAAAUGUG ..((((((((((((((((...((((....))))..)))))))).....)))))..)))-(((((((...)).))))). ( -18.00, z-score = -1.26, R) >droYak2.chr2L 15569454 77 - 22324452 UACCCUCGUUGAUUCAAUAUUUUGCUUGGGCAAUAAUUGAAUUUAAUAGAUGGCUGGG-AAAUUCCUUUGGAAAUAUG ..((((((((((((((((...((((....))))..)))))))).....)))))..)))-...((((...))))..... ( -16.40, z-score = -1.26, R) >droEre2.scaffold_4929 15083082 77 + 26641161 UACCCUCGUUGAUUCAAUAUUUUGCUUGGGCAAUAAUUGAAUUUAAUAGAUGCCUGGG-AAAUUCCUCUGGAAAUAUG ..(((.((((((((((((...((((....))))..)))))))).....))))...)))-...((((...))))..... ( -16.20, z-score = -1.25, R) >droAna3.scaffold_12916 8137057 74 - 16180835 GACCGUAUUUAAUUUCAUAUUGUGUUGAGGCAAUAAUGGAAUUUAAUAGCUGACUGAAGGAACUCUUUAAUGUG---- .....((((.(((((((((((((......))))).)))))))).))))....((..((((....))))...)).---- ( -11.60, z-score = -0.39, R) >dp4.chr4_group5 4986 58 - 2436548 UGCUGCUGCUGAUUCAAUAUUGUUCGGGGGCAAUAAUUGAAUUUAAUAGCUGGCUGGG-------------------- .(((((((..((((((((((((((....)))))).))))))))...)))).)))....-------------------- ( -18.30, z-score = -3.00, R) >droPer1.super_5 4338 58 - 6813705 UGCUGCUGCUGAUUCAAUAUUGUUCGGGGGCAAUAAUUGAAUUUAAUAGCUGGCUGGG-------------------- .(((((((..((((((((((((((....)))))).))))))))...)))).)))....-------------------- ( -18.30, z-score = -3.00, R) >droWil1.scaffold_180708 4974388 74 - 12563649 ----CUUACUGAUUCAAUAUUGCGCUCAGGCAAUAAUUGAAUUUAAUAGCUCGCUGGGCAAACUGCUUUAAAGUUAUG ----......(((((((((((((......))))).))))))))..((((((....((((.....))))...)))))). ( -17.70, z-score = -2.05, R) >droVir3.scaffold_12963 17111329 69 - 20206255 -------GUUGAUUCAAUAUUGAGCUUCAAUA-UAAUUGAAUUUAAUAGCUCGUUGGGUCAAG-GCUUUAAAAUUCUG -------.((((((((((...((((((((((.-..))))).......))))))))))))))).-.............. ( -14.71, z-score = -2.25, R) >consensus UACCCUCGUUGAUUCAAUAUUGUGCUUGGGCAAUAAUUGAAUUUAAUAGAUGGCUGGG_AAAUUCCUUUGGAAAU_UG ..........((((((((....(((....)))...))))))))................................... ( -5.12 = -5.11 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:32 2011