| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,607,990 – 22,608,092 |
| Length | 102 |
| Max. P | 0.777667 |
| Location | 22,607,990 – 22,608,092 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 75.03 |
| Shannon entropy | 0.41740 |
| G+C content | 0.50755 |
| Mean single sequence MFE | -29.67 |
| Consensus MFE | -17.66 |
| Energy contribution | -16.42 |
| Covariance contribution | -1.25 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.777667 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22607990 102 + 24543557 AAACAUUUAUGUAAUUGCUGUUAUCGACAGCGGCUGGCUCUGCAAAAUGGUCUCGUGGUCGCAUCCCGGAUCGGCUAGGGAACGGCGAUGUCGAUGGCGAUG ...(((((.((((...((((((...))))))((....)).)))))))))...((((.(((((((((((..((......))..))).)))).)))).)))).. ( -32.80, z-score = -0.64, R) >droSim1.chr3L 21896113 96 + 22553184 AAACAUUUAUGUAAUUGCUGUUAUCGACAGCGGCUGGCUCUGCAAAAUGGUCUCGUGGUCGCAUCCCGGAUCGGCUAGGGAAUGGCGAUGGCGAUG------ ...(((((.((((...((((((...))))))((....)).)))))))))...((((.(((((.((((..........))))...))))).))))..------ ( -30.60, z-score = -0.78, R) >droSec1.super_11 2529984 102 + 2888827 AAACAUUUAUGUAAUUGCUGUUAUCGACAGCGGCUGGCUCUGCAAAAUGGUCUCGUGGUCGCAUCCCGGAUCGGCUAGGGAACGGCGAUGGCGAUGGCGAUG ...(((((.((((...((((((...))))))((....)).)))))))))(((((((.(((((.((((..........))))...))))).)))).))).... ( -34.40, z-score = -0.92, R) >droAna3.scaffold_13337 22330756 79 + 23293914 AAACAUUUUUUUAAUAGCUGUUAUCGACAGCGGCUGGCUCUGCGAAAUGGCAUUGCUGCCACAUCCCGGAUAGGGAAUG----------------------- ................((((((...))))))(((.(((..(((......)))..))))))...((((.....))))...----------------------- ( -25.60, z-score = -2.31, R) >dp4.chrXR_group8 283510 80 + 9212921 AAACAUUUAUGUAAUUGCUGUUAUCGACAGCAACGGGCUAUGGAAAAUGGCCUCGUGGCCGCAUCUCGGAUCCGGCAAUG---------------------- ...............(((((((...)))))))(((((((((.....)))))).))).((((.(((...))).))))....---------------------- ( -26.30, z-score = -2.18, R) >droPer1.super_11889 581 80 - 848 AAACAUUUAUGUAAUUGCUGUUAUCGACAGCAACGGGCUCUGGAAAAUGGCCUCGUGGCCGCAUCUCGGAUCCGGCAAUG---------------------- .........(((..((((((((...))))))))((((.((((..(..(((((....)))))..)..)))))))))))...---------------------- ( -28.30, z-score = -2.85, R) >consensus AAACAUUUAUGUAAUUGCUGUUAUCGACAGCGGCUGGCUCUGCAAAAUGGCCUCGUGGCCGCAUCCCGGAUCGGCUAGGG______________________ ..............((((((((...))))))))((((.((((..(..(((((....)))))..)..))))))))............................ (-17.66 = -16.42 + -1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:17 2011