| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,589,754 – 22,589,833 |
| Length | 79 |
| Max. P | 0.901841 |
| Location | 22,589,754 – 22,589,833 |
|---|---|
| Length | 79 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 81.66 |
| Shannon entropy | 0.30990 |
| G+C content | 0.39069 |
| Mean single sequence MFE | -18.50 |
| Consensus MFE | -16.58 |
| Energy contribution | -17.86 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22589754 79 + 24543557 -----------UAAAGACCAAAAGCAAAUAUAUUAACGUAGAACUCCAACGGAAGGGUAUCUUAGCCAAAUGCUGAUGUGCUCCUUUAAA -----------.........................(((.(.....).)))(((((((((.(((((.....))))).)))).)))))... ( -15.10, z-score = -1.37, R) >droSim1.chr3L 21877920 79 + 22553184 -----------UAAAGACCAAGAAGCAAUAUAUUAACGUGGAUCUCCCACGGAAGGGUAUCUUAGCCAAAUGCUGAUGUGCUCCUUUAAA -----------.........................(((((.....)))))(((((((((.(((((.....))))).)))).)))))... ( -21.60, z-score = -2.65, R) >droSec1.super_11 2511957 79 + 2888827 -----------UAAAGACCAAAAAGCAAUAUAUUAACGUGGAUCUCCCACGGAAGGGUAUCUUAGCCAAAUGCUGAUGUGCUCCUUUAAA -----------.........................(((((.....)))))(((((((((.(((((.....))))).)))).)))))... ( -21.60, z-score = -3.04, R) >droYak2.chr3L 23037930 90 + 24197627 UAAAGUUCAGUUUAAGACCAAAAAGCGAUAUAUUAACAGGGAUCCUCCAAGGAAGGGUAUCGAAGCCAAAUGCUGAUGUGCUCCUUUAAA .....................((((.(((((((((.((.((((((((....).))))).......))...)).))))))).))))))... ( -12.91, z-score = 1.30, R) >droEre2.scaffold_4784 22244692 90 + 25762168 UAAAGUUGAGCUUAAGAGCAAAAAGCGAUGUAUUUACAAGGAUCUACCACGGAAGGGUAUCUCAGCCAAAUGCUGAUGUGCUCCUUUAAA (((((..((((.((..((((....((..(((....)))..((..((((.(....)))))..)).))....))))..)).))))))))).. ( -21.30, z-score = -1.04, R) >consensus ___________UAAAGACCAAAAAGCAAUAUAUUAACGUGGAUCUCCCACGGAAGGGUAUCUUAGCCAAAUGCUGAUGUGCUCCUUUAAA ....................................(((((.....)))))(((((((((.(((((.....))))).)))).)))))... (-16.58 = -17.86 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:15 2011