| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,586,091 – 22,586,183 |
| Length | 92 |
| Max. P | 0.906919 |
| Location | 22,586,091 – 22,586,183 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 88.54 |
| Shannon entropy | 0.24124 |
| G+C content | 0.38117 |
| Mean single sequence MFE | -24.67 |
| Consensus MFE | -19.66 |
| Energy contribution | -19.38 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22586091 92 + 24543557 ----------GGGCGAUUCGGUUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAAUGCCUGAUUUUUAUUAGUUGAAUUCUUUA ----------((((.((((((...(((.((((((((....)))).)))).)))((((.....))))..))))))))))........................ ( -23.30, z-score = -2.17, R) >droGri2.scaffold_15110 15023784 101 + 24565398 -UGGACACGCUUGGCAUUCGGCUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAGUGCCUGAUUUUUAUUAGCUGAAUUCUUUA -....((.(((.(((((((((...(((.((((((((....)))).)))).)))((((.....))))..)))))))))...........)))))......... ( -27.20, z-score = -2.11, R) >droMoj3.scaffold_6680 2584719 101 - 24764193 -UGGACACGCUUGGCAUUCGGCUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAGUGGCUGAUUUUUAUUAGUUGAAUUCUUUA -...........((.((((.(((..(((((((((((....)))).))))....((((.....)))))))..)))(((((((....))))))))))).))... ( -25.60, z-score = -1.67, R) >droVir3.scaffold_13049 8067873 101 - 25233164 -UGGACACGCUUGGCAUUCGGCUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAGUGGCUGAUUUUUAUUAGUUGAAUUCUUUA -...........((.((((.(((..(((((((((((....)))).))))....((((.....)))))))..)))(((((((....))))))))))).))... ( -25.60, z-score = -1.67, R) >droWil1.scaffold_180698 4257976 101 - 11422946 -GCCUCGCUCAGGCAUUCCAGUUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAGUGCCUGAUUUUUAUUAGUUGAAUUCUUUA -.......((((((((((.(((..(((.((((((((....)))).)))).)))((((.....))))))).))))))))))...................... ( -32.60, z-score = -4.22, R) >droPer1.super_80 276838 102 - 286535 AUGGGCGUGGACGGGGUUCAGUUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAAUGCCUGAUUUUUAUUAGUUGAAUUCUUUA ............(((((((((((..(((((((((((....)))).))))....((((.....)))))))..)))..(((((....))))).))))))))... ( -25.10, z-score = -1.30, R) >dp4.chrXR_group8 257186 102 + 9212921 AUGGGCGUGGACGGGGUUCAGUUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAAUGCCUGAUUUUUAUUAGUUGAAUUCUUUA ............(((((((((((..(((((((((((....)))).))))....((((.....)))))))..)))..(((((....))))).))))))))... ( -25.10, z-score = -1.30, R) >droAna3.scaffold_13337 22310770 92 + 23293914 ----------UGGUGAUUCGGCUUGGGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAAUGCCUGAUUUUUAUUAGUUGAAUUCUUUA ----------((((((.((((((..(((((((((((....)))).))))....((((.....)))))))..)..))).))...))))))............. ( -21.20, z-score = -1.52, R) >droEre2.scaffold_4784 22241124 92 + 25762168 ----------AGGCGAUUCGGCUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCUCGAUUUUUUCGCACUUGAAUGCCUGAUUUUUAUUAGUUGAAUUCUUUA ----------..((((......(((((.((((((((....)))).))))...))))).....))))....((((..(((((....)))))....)))).... ( -20.40, z-score = -1.40, R) >droYak2.chr3L 23034259 92 + 24197627 ----------AGGCGAUUCGGUUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAAUGCCUGAUUUUUAUUAGUUGAAUUCUUUA ----------((((.((((((...(((.((((((((....)))).)))).)))((((.....))))..))))))))))........................ ( -23.30, z-score = -2.28, R) >droSec1.super_11 2508378 92 + 2888827 ----------GGGCGAUUCGGUUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAAUGCCUGAUUUUUAUUAGUUGAAUUCUUUA ----------((((.((((((...(((.((((((((....)))).)))).)))((((.....))))..))))))))))........................ ( -23.30, z-score = -2.17, R) >droSim1.chr3L 21874326 92 + 22553184 ----------GGGCGAUUCGGUUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAAUGCCUGAUUUUUAUUAGUUGAAUUCUUUA ----------((((.((((((...(((.((((((((....)))).)))).)))((((.....))))..))))))))))........................ ( -23.30, z-score = -2.17, R) >consensus __________AGGCGAUUCGGUUUGAGUGGCACAUUAUUUGAUGAUGCUUUUCGCGAUUUUUUCGCACUUGAAUGCCUGAUUUUUAUUAGUUGAAUUCUUUA ...............((((((((..(((((((((((....)))).))))....((((.....)))))))..)))..(((((....))))).)))))...... (-19.66 = -19.38 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:15 2011