| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,582,273 – 22,582,361 |
| Length | 88 |
| Max. P | 0.615360 |
| Location | 22,582,273 – 22,582,361 |
|---|---|
| Length | 88 |
| Sequences | 10 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 64.90 |
| Shannon entropy | 0.69793 |
| G+C content | 0.44204 |
| Mean single sequence MFE | -20.77 |
| Consensus MFE | -8.57 |
| Energy contribution | -8.47 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.17 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.615360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22582273 88 + 24543557 ---------------CGAGUACAAGCACGGUGGUUAGAG-AAG-GGCGGCCAAUAAAUCUGAUUUAUUGGUUUUCAAAACAGAUUUUCGGAGCGCUCGGAACUGA ---------------(((((....((.(((..(((....-...-((..((((((((((...))))))))))..))......)))..)))..)))))))....... ( -20.92, z-score = -0.61, R) >droSim1.chr3L 21870489 88 + 22553184 ---------------CGCGGACAAGCGCGGUGGUUGGAG-AAG-GGCGGCCAAUAAAUCUGAUUUAUUGGUUUUCAAAACAGAUUUUCGGAGCGCACGGAACAGA ---------------((((......))))(((.((.(((-((.-((..((((((((((...))))))))))..))........))))).)).))).......... ( -24.40, z-score = -1.38, R) >droSec1.super_11 2504556 88 + 2888827 ---------------CGCGGACAAGCGCGGUGGUUGGAG-AAG-GGCGGCCAAUAAAUCUGAUUUAUUGGUUUUCAAAACAGAUUUUCGGAGCGCACGGAACAGA ---------------((((......))))(((.((.(((-((.-((..((((((((((...))))))))))..))........))))).)).))).......... ( -24.40, z-score = -1.38, R) >droYak2.chr3L 23030480 84 + 24197627 --------------------AUAAGCGCAGUGGGUAGAG-AAAUGGCGGCCAAUAAAUCUGAUUUAUUGGUUUUCAAAACAGAUUUUCGGAGCGCACGGAACAGA --------------------....((((..((((.....-...(((..((((((((((...))))))))))..))).........))))..)))).......... ( -19.73, z-score = -1.23, R) >droEre2.scaffold_4784 22237322 84 + 25762168 --------------------AUAAGCGCAGUGGGUGGAG-AAGUGGCGGCCAAUAAAUCUGAUUUAUUGGUUUUCAAAACAGAUUUUCGGAGCGCACGGAACAGA --------------------....((((..((((.....-...(((..((((((((((...))))))))))..))).........))))..)))).......... ( -20.83, z-score = -1.08, R) >droAna3.scaffold_13337 22307287 86 + 23293914 -------------------GAAAGCUCCCUGGGAAAGGGAAAGACCCGGUCAAUUAAUCUGAUUUAUUGGUUUUCAAAACAGAUUGGAGAGGCGUAGCAGGAAAA -------------------....(((((((..((..(((.....)))..))..((((((((.(((..........))).))))))))..))).).)))....... ( -18.50, z-score = 0.29, R) >dp4.chrXR_group8 251856 104 + 9212921 UGGAGUCGAGAGACGUAGAUACAGAGAGACGGAGAGACG-GAGAGGCAGCCAAUAAAUCAGAUUUAUUGGUUUUCAAAACAGAUUUUCGGGGCGCCAGAGACCAA (((.(((....)))................((.(...((-((((...(((((((((((...))))))))))).((......))))))))...).)).....))). ( -23.70, z-score = -1.95, R) >droWil1.scaffold_180698 4251619 96 - 11422946 -AGAG-CGAGAGAGCGAUAGAUAGACAGACAUAUGGGCAAGAGAGUGGGCCAAUAAAUCAGAUUUAUUGGUUUUCAAAACAGAUUUUCGGG-CAACACA------ -...(-(......)).....................((..((((((((((((((((((...)))))))))))).........))))))..)-)......------ ( -17.30, z-score = -1.57, R) >droVir3.scaffold_13049 8062944 89 - 25233164 ------------UCCGGCUGAUGGGUGAAGAUGAUAUCU-GGCAGGCAGCCAAUAAAUCAGAUUUAUUGGUUUUCAAAACAGAUUUUCUGUGCAAA-AUACCA-- ------------...(((((..(((((.......)))))-..)))(((((((((((((...)))))))))))......((((.....))))))...-...)).-- ( -20.20, z-score = -0.28, R) >droGri2.scaffold_15110 15019010 91 + 24565398 ----------UGUGCAGA-GAUGGGUCGAGUUGAUAACU-GGCAGUCAGCCAAUAAAUCAGAUUUAUUGGUUUUCAAAACAGAUUUUCAGAGCUAA-AUACCAA- ----------........-..(((....((((((.((((-(...(..(((((((((((...)))))))))))..)....))).)).)))..)))..-...))).- ( -17.70, z-score = -0.27, R) >consensus ________________G__GAUAAGCGCAGUGGUUAGAG_AAGAGGCGGCCAAUAAAUCUGAUUUAUUGGUUUUCAAAACAGAUUUUCGGAGCGCACGGAACAGA ............................................(..(((((((((((...)))))))))))..).............................. ( -8.57 = -8.47 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:14 2011