| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,565,588 – 22,565,678 |
| Length | 90 |
| Max. P | 0.523808 |
| Location | 22,565,588 – 22,565,678 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 50.78 |
| Shannon entropy | 1.01728 |
| G+C content | 0.42110 |
| Mean single sequence MFE | -21.21 |
| Consensus MFE | -4.34 |
| Energy contribution | -4.26 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.20 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.523808 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22565588 90 - 24543557 --UUUCUUUUCCCCUGCCUCCUCAGGGGUAG-UUAGAUAAUUUCUGUUAACAUUGCAACCCCUGCG----AGCACUUAUUGCGCAUAAGUCCUUUUG---------- --............(((...(.(((((((.(-(..(.((((....)))).)...)).))))))).)----.(((.....))))))............---------- ( -18.70, z-score = -1.31, R) >droSim1.chr3L 21858072 90 - 22553184 --UUUCUUUUCCCCUGCCUGCUCAGGGGUAG-UUAGAUAAAUUCUGUUAACAUUGCAACCCCUGCG----AGCCCUUAUUGUGCAUAAGUCCUUUCG---------- --.................((((((((((.(-(((((.....))))........)).))))))..)----))).(((((.....)))))........---------- ( -17.10, z-score = -0.46, R) >droSec1.super_11 2492296 90 - 2888827 --UUUCUUUUCCCCUGUCUGCUCAGGGGUAG-UUAGAUAAAUUCUGUUAACAUUGCAACCCCUGAG----AGCCCUUAUUGUGCAUAAGUCCUUUCG---------- --..................(((((((((.(-(((((.....))))........)).)))))))))----((..(((((.....)))))..))....---------- ( -20.80, z-score = -1.89, R) >droYak2.chr3L 23015278 88 - 24197627 --UUAAUUUUCCCCUCCCUGCUCAGGGGUAG-UUAGAUAAAUUCUGUUAACAUUGCAACCCCUGCC----AGCCCUUAUUAUUCAU--GUCCUUUUG---------- --.................((((((((((.(-(((((.....))))........)).)))))))..----))).............--.........---------- ( -16.00, z-score = -1.64, R) >droEre2.scaffold_4784 22226166 89 - 25762168 --UUUCUCUUCCCCUGCCUGCGCAGGGGUAG-UCAGAUAAAUUCUGUUAGCAUUGCAACCCCUGCG----AACCCCUAUUAUGCACAAUUCCUUUG----------- --.....((.(((((((....))))))).))-.((((.....))))...((((((((.....))))----)..........)))............----------- ( -21.90, z-score = -2.33, R) >droAna3.scaffold_13337 22293470 68 - 23293914 ----UGCUUUUCUCCUUUCAAUCAGGGGUAG--UAGAUAAUGU--AAC-UACCC-------CUGGC---UAGUA--UGUUAAGGUCCUU------------------ ----.(((((...........((((((((((--(.........--.))-)))))-------)))).---.....--....)))))....------------------ ( -18.80, z-score = -1.62, R) >dp4.chrXR_group8 237625 103 - 9212921 UACAUUAUCUACUCGCUCCAGGAAGGGGUGG-UUAGAUAAUGUUAGCUUACAGUACUACCCCUGCAAGACAACCCCUGUUAUGGGCUAUUUUAGGACUCCCAUC--- .((((((((((..((((((.....)))))).-.))))))))))((((((((((........)))...((((.....)))).))))))).....((....))...--- ( -29.90, z-score = -1.22, R) >droPer1.super_80 257211 103 + 286535 UACAUUAUCUACUCGCUCCAGGGAGGGGUGG-UUAGAUAAUGUUAGCUUACAGUACUACCCCUUCGCGACAACCCCUGUUAUGGGCUAUGUUAAGACUCCCAUC--- .((((((((((..((((((.....)))))).-.))))))))))....................((..((((..(((......)))...))))..))........--- ( -28.30, z-score = -0.59, R) >droWil1.scaffold_180698 4232575 103 + 11422946 -UUUUAUCUACCCCUCCUGCGUAAGGGGUAGUUUAGAUAAUGUUAGAUACAAAUACUACCCCUGAA---UGUUAACUCUUAAUAUCCUGUAAGGACUUUUACAUAGA -.....((((........((((.(((((((((........(((.....)))...)))))))))..)---)))............(((.....)))........)))) ( -19.50, z-score = -0.23, R) >droVir3.scaffold_13049 8048950 81 + 25233164 -UAUAAACUACCCCUUCCGUGACAGGGGCGG-UUAGAUAAUGUUAA--AUAA---------CAUAA---GGAUAUCUGUAAACGGCUUAAUGCUAUU---------- -....(((..(((((........)))))..)-))((((((((((..--..))---------)))..---...)))))......(((.....)))...---------- ( -17.60, z-score = -0.93, R) >droMoj3.scaffold_6680 2565258 84 + 24764193 -UUUUUGCCACCCCUUCUGUAUAAGGGGUAA-CUAGAUAAUGUUAAACAUAA---------CAUAA---CAGACGCUGCAAGGGGCAUGUUCCUAUAC--------- -....(((((((((((......)))))))..-.......((((((....)))---------)))..---..............))))...........--------- ( -19.20, z-score = -0.74, R) >droGri2.scaffold_15110 15004713 92 - 24565398 -UUCUGAUUACCCCUACUGCAUCAGGGGUGG-UUAGAUAAUGUUAAAU-UACAU-UAAAAACUGGU---UUUAA--UGUUAAGGAUAUGUCGCUGCUACAU------ -.(((((((((((((........))))))))-)))))..(((((....-.((((-(((((.....)---)))))--)))....))))).............------ ( -26.70, z-score = -3.17, R) >consensus __UUUCUUUUCCCCUCCCUGCUCAGGGGUAG_UUAGAUAAUGUUAGUUAACAUUGCAACCCCUGCG____AGCCCCUGUUAUGGACAAGUCCUUUCG__________ ..........((((..........))))............................................................................... ( -4.34 = -4.26 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:11 2011