Locus 8412

Sequence ID dm3.chr3L
Location 22,557,856 – 22,557,949
Length 93
Max. P 0.618837
window11557

overview

Window 7

Location 22,557,856 – 22,557,949
Length 93
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 73.87
Shannon entropy 0.33461
G+C content 0.33020
Mean single sequence MFE -18.17
Consensus MFE -13.28
Energy contribution -12.83
Covariance contribution -0.44
Combinations/Pair 1.05
Mean z-score -1.36
Structure conservation index 0.73
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.26
SVM RNA-class probability 0.618837
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 22557856 93 - 24543557
UACGGGAUCUGAUGGUACAUUUUAGUUAAAAUGAAUAUUU---------------------------UUAACUGCACUGGCCGCGACUAUUGGAUACUGUGUGAUGAUAUGGAGAUAUGA
(((((.(((..(((((.(.....((((((((.......))---------------------------))))))((.......))))))))..))).)))))................... ( -20.60, z-score =  -1.98, R)
>droSim1.chr3L 21850363 93 - 22553184
UAAGGGAUCUGACGGUACAUUUUAGGUAAAAUAAAUAUUU---------------------------UUUACUGCAAGGGAUGCGACUGUUGGAUACUGUGUAAUGAUAUGGAGAUAUUU
......(((..(((((.((((((.(((((((........)---------------------------))))))....))))))..)))))..))).((((((....))))))........ ( -21.00, z-score =  -2.84, R)
>droSec1.super_11 2484890 120 - 2888827
UAAGGGAUCUGAUGGUACAUUUUAGGUAAAAUAAAUAGGUAAAAUAAAUAGGUAAAAUAAAUAUAAAUAUACUGCAAGGGACGCGACUAUUGGAUACUGUGUAAUGAUAUGGAGAUAUUC
......(((..(((((..((((((..((.......))..))))))...........................(((.......))))))))..))).((((((....))))))........ ( -12.90, z-score =   0.76, R)
>consensus
UAAGGGAUCUGAUGGUACAUUUUAGGUAAAAUAAAUAUUU___________________________UUUACUGCAAGGGACGCGACUAUUGGAUACUGUGUAAUGAUAUGGAGAUAUUA
......(((..(((((..(((((....)))))........................................(((.......))))))))..))).((((((....))))))........ (-13.28 = -12.83 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:10 2011