| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,548,594 – 22,548,653 |
| Length | 59 |
| Max. P | 0.536118 |
| Location | 22,548,594 – 22,548,653 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 67.80 |
| Shannon entropy | 0.45414 |
| G+C content | 0.30508 |
| Mean single sequence MFE | -7.90 |
| Consensus MFE | -7.31 |
| Energy contribution | -4.33 |
| Covariance contribution | -2.98 |
| Combinations/Pair | 1.70 |
| Mean z-score | -0.21 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.536118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22548594 59 - 24543557 UUGGACGACUGAUUAUUUUUUAACAGUAGUGAUUUUAAGGCGAUUUUAAGUAGUUUUUC ....((.((((.(((.....))))))).))............................. ( -4.20, z-score = 1.26, R) >dp4.chrXL_group1a 2220199 59 - 9151740 UUGGAUAGCUUGUUAUUUUUCAAUAUUAAUAAUUUGGCGAUGAUCGUCAAAAAUCUUUC ..((((...((((((...........))))))(((((((.....))))))).))))... ( -8.90, z-score = -1.05, R) >droSim1.chr3L 21848477 59 - 22553184 UGGGAAAAGUGAUUAUUUUUAAACAGUAGUGAUUUUGAGGCGAGCUCAGGUACUUUUUC ..(((((((((((((((.......))))))...((((((.....))))))))))))))) ( -10.60, z-score = -0.86, R) >consensus UUGGAAAACUGAUUAUUUUUAAACAGUAGUGAUUUUGAGGCGAUCUUAAGUAAUUUUUC ..(((.(((((((((((..........))))))((((((.....))))))))))).))) ( -7.31 = -4.33 + -2.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:10 2011