| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,538,368 – 22,538,464 |
| Length | 96 |
| Max. P | 0.911410 |
| Location | 22,538,368 – 22,538,464 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 93.71 |
| Shannon entropy | 0.08609 |
| G+C content | 0.41534 |
| Mean single sequence MFE | -20.73 |
| Consensus MFE | -18.97 |
| Energy contribution | -19.63 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911410 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22538368 96 - 24543557 AAGAUGGGCUCCUUGUUGAUACAGAUCACUAGGUUAUCAUCACCAAAUGUAUCUCAGGGCCACACACACAACGAGCAUCAAACACGUAUCACGUAU ..(((((((.(((.(..((((((........(((.......)))...)))))).))))))).....(.....)..))))....(((.....))).. ( -17.80, z-score = -0.31, R) >droSim1.chr3L 21838209 94 - 22553184 AAAAUGGGCUCCUUGUUGAUACAGAUCAGUAGGUUAUCAUAACCAAAAGUAUCUCAGAGC--CACACACAAGGAGCAUCAAUCACGUAUCACGUAU ....((((((((((((((.(((......)))(((((...)))))................--..)).))))))))).)))...(((.....))).. ( -22.20, z-score = -2.84, R) >droSec1.super_11 2472810 94 - 2888827 AAAAUGGGCUCCUUGUUGAUACAGAUCAGUAGGUUAUCAUAACCAAAAGUAUCUCAGAGC--CACACACAAGGAGCAUCAAUCACGUAUCACGUAU ....((((((((((((((.(((......)))(((((...)))))................--..)).))))))))).)))...(((.....))).. ( -22.20, z-score = -2.84, R) >consensus AAAAUGGGCUCCUUGUUGAUACAGAUCAGUAGGUUAUCAUAACCAAAAGUAUCUCAGAGC__CACACACAAGGAGCAUCAAUCACGUAUCACGUAU ....((((((((((((((((....))))...((((.....)))).......................))))))))).)))...(((.....))).. (-18.97 = -19.63 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:09 2011