| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,150,976 – 6,151,079 |
| Length | 103 |
| Max. P | 0.929687 |
| Location | 6,150,976 – 6,151,079 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 94.17 |
| Shannon entropy | 0.08024 |
| G+C content | 0.39806 |
| Mean single sequence MFE | -29.13 |
| Consensus MFE | -25.92 |
| Energy contribution | -26.03 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.929687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6150976 103 - 23011544 UGUAUAAAGGCAACUUUAAAAUAGAGUAGGCUGUAAAGUAUCUCAUAUAAAGCUGAAGAGCUCGUUCGGCGAUUUGAGUACUACGCUCCAAGGAGCUACUCUC ....(((((....)))))....((((((........((((.((((.((...(((((((....).)))))).)).))))))))..((((....)))))))))). ( -32.00, z-score = -2.82, R) >droSec1.super_5 4221386 103 - 5866729 UGUAUAAAGGCAACUUUAAAAUAGUGUAGGCUGUAAAGUAUCUUAUAUAAAGCUGACAAACUCGUUCGGCGAUUUGAGUACUAGGCUCCAAGGAGCUACUCCU ....(((((....)))))..(((((....)))))..((((.((((.((...((((((......).))))).)).)))))))).(((((....)))))...... ( -26.20, z-score = -1.33, R) >droSim1.chr2L 5943332 103 - 22036055 UGUAUAAAGGCAACUUUAAAAUAGUGUAGGCUGUAAAGUAUCUCAUAUAAAGCUGAAAAACGCGUUCGGCGAUUUGAGUACUAGGCUCCAAGGAGCUACUCUC ....(((((....)))))..(((((....)))))..((((.((((.((...((((((.......)))))).)).)))))))).(((((....)))))...... ( -29.20, z-score = -2.55, R) >consensus UGUAUAAAGGCAACUUUAAAAUAGUGUAGGCUGUAAAGUAUCUCAUAUAAAGCUGAAAAACUCGUUCGGCGAUUUGAGUACUAGGCUCCAAGGAGCUACUCUC ....(((((....)))))..((((......))))..((((.((((.((...((((((.......)))))).)).))))))))..((((....))))....... (-25.92 = -26.03 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:31 2011