Locus 8409

Sequence ID dm3.chr3L
Location 22,538,253 – 22,538,366
Length 113
Max. P 0.971408
window11554

overview

Window 4

Location 22,538,253 – 22,538,366
Length 113
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 89.64
Shannon entropy 0.14405
G+C content 0.33536
Mean single sequence MFE -28.12
Consensus MFE -20.55
Energy contribution -21.00
Covariance contribution 0.45
Combinations/Pair 1.09
Mean z-score -3.11
Structure conservation index 0.73
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.85
SVM RNA-class probability 0.971408
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 22538253 113 - 24543557
AACUUUAAUGUACAGGUUGAAGAAUCCGUUUCCGAACAUUUAAUAUAGAUUAUGCAAUCAAUUAUUUAUAGAUAUGAGUAUAGGACCAGGAUCACUAGCCAUGUCGUACAUAU
.......((((((.(((((...((((..(...............)..))))...)))))...........((((((.((.(((((......)).))))))))))))))))).. ( -21.56, z-score =  -1.06, R)
>droSim1.chr3L 21838095 112 - 22553184
AACCUUAAUAUACAGGUGGAAGGAUCCGCUUCCG-ACUCUUUAUAUAGAUAAUGCAAUCAAUUAUUAAUAUAUACGAGUAUAGAACCAGGAUCACUUGCCAUGUCGUAUAUAC
.......(((((((.((((((((((((..(((..-((((..(((((.((((((.......)))))).)))))...))))...)))...))))).))).)))).).)))))).. ( -31.50, z-score =  -3.98, R)
>droSec1.super_11 2472696 112 - 2888827
AACCUUAAUAUACAGGUGGAAGAAUCCGCUUCCG-ACUCUUUAUAUAGAUAAUGCAAUCAAUUAUUUAUAGAUAAGAGUAUAGAACCAGGAUCACUUGCCAUGUCGUAUAUAC
.......(((((((.(((((((.((((..(((..-((((((..((((((((((.......))))))))))...))))))...)))...))))..))).)))).).)))))).. ( -31.30, z-score =  -4.31, R)
>consensus
AACCUUAAUAUACAGGUGGAAGAAUCCGCUUCCG_ACUCUUUAUAUAGAUAAUGCAAUCAAUUAUUUAUAGAUAAGAGUAUAGAACCAGGAUCACUUGCCAUGUCGUAUAUAC
.......(((((((.((((....((((..(((...((((....((((((((((.......)))))))))).....))))...)))...))))......)))).).)))))).. (-20.55 = -21.00 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:08 2011