| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,523,452 – 22,523,512 |
| Length | 60 |
| Max. P | 0.608508 |
| Location | 22,523,452 – 22,523,512 |
|---|---|
| Length | 60 |
| Sequences | 7 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 74.11 |
| Shannon entropy | 0.50576 |
| G+C content | 0.51865 |
| Mean single sequence MFE | -19.56 |
| Consensus MFE | -11.22 |
| Energy contribution | -11.49 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608508 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22523452 60 + 24543557 UGCUGCUCGGCUGGA--------GCGGGCAGAGUUAUUGCCAAGCAUUCGAGAAUUUAUAGGAUGCAA ...(((((.....))--------)))(((((.....)))))..((((((...........)))))).. ( -17.90, z-score = -0.71, R) >droSim1.chr3L 21824769 60 + 22553184 UGCUGCCCGGCUGGA--------GCGGGCAGAGUUAUUGCCAAGCAUUUGAGAAUUUAUAGGAUGCAA ..(((((((.(....--------))))))))............((((((...........)))))).. ( -18.10, z-score = -0.76, R) >droSec1.super_11 2459577 60 + 2888827 UGCUGCCCGGCUGGA--------GCGGGCAGAGUUAUUGCCAAGCAUUUGAGAAUUUAUAGGAUGCAA ..(((((((.(....--------))))))))............((((((...........)))))).. ( -18.10, z-score = -0.76, R) >droYak2.chr3L 22986647 68 + 24197627 AGCUGCCCGGCUGGGCUUUGCCGGGCGGCAGAGUUAUAGCGAAGCAUUUGAGAAUUUAUAGGAUGCAA .((((((((((........))))))))))..............((((((...........)))))).. ( -28.80, z-score = -2.86, R) >droEre2.scaffold_4784 22193150 60 + 25762168 CGCUGCCCGGCUGGG--------GCGGGCAGAGUUAUGGCCACGCAUUUGAGAAUUUAUAGGAUGCAA ..(((((((.(...)--------.)))))))............((((((...........)))))).. ( -18.90, z-score = -0.43, R) >droAna3.scaffold_13337 22259585 58 + 23293914 ---UGUUCGUGUUGGC-------GCGGGCAGAGUUAUUGCCAACCAUUCAGGAGUUCACGGGAAGCAU ---(((((.(((..((-------...(((((.....)))))..((.....)).))..))).).)))). ( -13.40, z-score = 0.27, R) >dp4.chrXR_group8 201043 68 + 9212921 UGUUGCUCCAUGGAGGACACGAGUGGGGGCGAGUUAUUGCCAGGCUUUUGGAUAUUUAUGGGAUGCAA ..((((((((((((...((.((((...(((((....)))))..)))).))....))))))))..)))) ( -21.70, z-score = -2.14, R) >consensus UGCUGCCCGGCUGGG________GCGGGCAGAGUUAUUGCCAAGCAUUUGAGAAUUUAUAGGAUGCAA ..(((((((...............)))))))............((((((...........)))))).. (-11.22 = -11.49 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:06 2011