| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,511,704 – 22,511,819 |
| Length | 115 |
| Max. P | 0.924630 |
| Location | 22,511,704 – 22,511,819 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 89.64 |
| Shannon entropy | 0.18448 |
| G+C content | 0.51614 |
| Mean single sequence MFE | -36.76 |
| Consensus MFE | -25.78 |
| Energy contribution | -28.02 |
| Covariance contribution | 2.24 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.71 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924630 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22511704 115 - 24543557 UGGGGUCGAAAUCGGUGCAGGGGAGGGGCGGGCUAUUUUUUCGGGCGGUUAUUGUUGGGUCGUUUGCUGGAAAAGUUGGACGACUUUUCUGGUUUUAUGGUUUAGCAGUUCGCAG .....((((((.....((..(.......)..)).....))))))((((..((((((((..(((..((..((((((((....))))))))..))...)))..)))))))))))).. ( -35.20, z-score = -2.47, R) >droSim1.chr3L 21812745 115 - 22553184 UGGGGUCGAAAUCGGUGCUGGGGAGGGGCGGGCUAUUUUUUCGGGCGGUUGUUGUUGGGUCGUUUGCUGGAAAAGUUGGACGACUUUUCUGGUUUUAUGGUUUAGCAGUUCGCAG .....((((((.....(((.(.......).))).....))))))((((...(((((((..(((..((..((((((((....))))))))..))...)))..))))))).)))).. ( -37.30, z-score = -2.77, R) >droSec1.super_11 2447393 115 - 2888827 UGGGGUCGAAAUCGGUGCUGGGGAGGGGCGGGCUAUUUUUUCGGGCGGUUGUUGUUGGGUCGUUUGCUAGAAAAGUUGGACGACUUUUCUGGUUUUAUGGUUUAGCAGUUCGCAG .....((((((.....(((.(.......).))).....))))))((((...(((((((..(((..((((((((((((....))))))))))))...)))..))))))).)))).. ( -38.30, z-score = -3.22, R) >droYak2.chr3L 22974290 113 - 24197627 -UCGGACGAAAUCGGUGAGGGGGAGGAGCGGGCU-UUUUUUCGGGCGGUUGUUGUUGGGUCGUUUGCUGGAAAAGUUGGACGACUUUUCUGGUUUUAUGGUUUAGCAGUUCGCAG -.(((((..(((((.(...(..((((((....))-))))..).).)))))..((((((..(((..((..((((((((....))))))))..))...)))..)))))))))))... ( -38.40, z-score = -2.95, R) >droEre2.scaffold_4784 22181167 102 - 25762168 -UGGGACGAAAUCGCUGCGGGGGAGGAGCGGGCCGUUUUUUCGGACGGUUG------------UUGCUGGAAAAGUUGGACGACUUUUCUGGUUUUAUGGUUUAGCAUUUCGCAG -.............(((((..((..((((.(((((((......))))))).------------..((..((((((((....))))))))..))......))))..).)..))))) ( -34.60, z-score = -2.14, R) >consensus UGGGGUCGAAAUCGGUGCGGGGGAGGGGCGGGCUAUUUUUUCGGGCGGUUGUUGUUGGGUCGUUUGCUGGAAAAGUUGGACGACUUUUCUGGUUUUAUGGUUUAGCAGUUCGCAG ......(((((.....((..(.......)..)).....))))).((((...(((((((..(((..((((((((((((....))))))))))))...)))..))))))).)))).. (-25.78 = -28.02 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:03 2011