| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,494,276 – 22,494,359 |
| Length | 83 |
| Max. P | 0.533711 |
| Location | 22,494,276 – 22,494,359 |
|---|---|
| Length | 83 |
| Sequences | 9 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 64.21 |
| Shannon entropy | 0.70991 |
| G+C content | 0.44801 |
| Mean single sequence MFE | -20.43 |
| Consensus MFE | -10.53 |
| Energy contribution | -9.58 |
| Covariance contribution | -0.95 |
| Combinations/Pair | 1.79 |
| Mean z-score | -0.26 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.533711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22494276 83 - 24543557 AACAAAGCAUUCCCAAAACAGGAUAUAAAAAGGGCACGGU-------AGGUAGGUGCGCAUUUGCGUGUGACUUUUUGUGAAUGUCUUUA-- ...(((((((((((......))..((((((((.(((((.(-------((((........))))))))))..))))))))))))).)))).-- ( -20.50, z-score = -0.86, R) >droEre2.scaffold_4784 22163574 88 - 25762168 AACAAAGCAAU-CCAAAACAGGAUAUAAAAAGGGUAGGGCAGGCAAAAGGUAAGUGCGCAUUUGCGUGCGACUUUUUGUGAGUUCCUUU--- .........((-((......))))....((((((....((..(((((((((..(..(((....)))..).)))))))))..))))))))--- ( -25.00, z-score = -2.14, R) >droYak2.chr3L 1281847 81 + 24197627 AACAAAGCAUU-CCAAAACAGGAUAUAAAACGGGUAGGGC-------AGGUAAGUGCGCAUUUGCGUGCGACUUUUUGUGUAUUCCUUU--- ...........-.......((((((((.((..(((...((-------(.((((((....)))))).))).)))..)).)))).))))..--- ( -17.70, z-score = -0.03, R) >droSec1.super_11 2430327 83 - 2888827 AACAAAGCAUUCCCAAAACAGGAUAUAGAAAGGGCAGGGC-------AGGUAAGUGCGCAUUUGCGUGUGACUUUUUGUGAAUUUCUUUU-- ..........(((.......)))...(((((...((.((.-------((((..(..(((....)))..).)))).)).))..)))))...-- ( -14.90, z-score = 1.09, R) >droSim1.chr3L 21795869 83 - 22553184 AACAAAGCAUUCCCAAAACAGGAUAUAGAAAGGGCAGGGC-------AGGUAAGUGCGCAUUUGCGUGUGACUUUUUGUGAAUUUCUUUU-- ..........(((.......)))...(((((...((.((.-------((((..(..(((....)))..).)))).)).))..)))))...-- ( -14.90, z-score = 1.09, R) >dp4.chrXR_group8 166740 81 - 9212921 -------UACAGCUCGGGCGGGACCCAGAAAGGACACACA----CAAAGCAAAGUGCGCAUUUGCGUGCGACUUUUUGUGGCAUCGUGUUUU -------........(((.....)))....(((((((.((----(((((....(..(((....)))..)....))))))).....))))))) ( -23.70, z-score = -0.48, R) >droPer1.super_80 186199 81 + 286535 -------UACAGCUCGGGCGGGACCCAGAAAGGACACACA----CAAAGCAAAGUGCGCAUUUGCGUGCGACUUUUUGUGGCAUCGUGUUUU -------........(((.....)))....(((((((.((----(((((....(..(((....)))..)....))))))).....))))))) ( -23.70, z-score = -0.48, R) >droAna3.scaffold_13337 22233973 81 - 23293914 --GGCAAGGCACGCUCGAAAGGAGCCUGGAAGGACACAC------AAGGCAAAGUGCGCAUUUGCGUGCG-CUUUUUGGUAUUUCCUCUU-- --....((((...(.(....)).))))(((((.((.((.------(((((...(..(((....)))..))-)))).)))).)))))....-- ( -26.30, z-score = -0.72, R) >droGri2.scaffold_15110 14925668 81 - 24565398 --CUCAAACUGGCAUGCAGAAAAGGCAUAGAAAAUACACC----AAAGCAAAAGUGCGCAUUUGUGCGAGGCUUUUUGUGA-AUUUUA---- --...........((((.......))))..(((((.(((.----(((((.....(((((....)))))..)))))..))).-))))).---- ( -17.20, z-score = 0.19, R) >consensus AACAAAGCAUUCCCAAAACAGGAUAUAGAAAGGGCACGGC_____AAAGGUAAGUGCGCAUUUGCGUGCGACUUUUUGUGAAUUCCUUUU__ ...................(((((((((((((.....................((((((....))))))..)))))))))...))))..... (-10.53 = -9.58 + -0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:45:01 2011