| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,483,817 – 22,483,876 |
| Length | 59 |
| Max. P | 0.762686 |
| Location | 22,483,817 – 22,483,876 |
|---|---|
| Length | 59 |
| Sequences | 3 |
| Columns | 59 |
| Reading direction | reverse |
| Mean pairwise identity | 90.80 |
| Shannon entropy | 0.12451 |
| G+C content | 0.46207 |
| Mean single sequence MFE | -15.84 |
| Consensus MFE | -14.30 |
| Energy contribution | -14.08 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.762686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22483817 59 - 24543557 AGAAAAGGAGGCGACCUCGUGAAUACGGGAUUGGGUCGUUAGCGAUGUCUUUUUUUUCA .(((((((((((((.(((((....))))).))).((((....))))..)))))))))). ( -17.30, z-score = -1.61, R) >droSim1.chr3L_random 1015712 56 - 1049610 AGAAAAGGAGGCGACCGCGUAAAUACAGGAUUGGGUCGUUAGCGAUGUCUUUUUCA--- .(((((((((((((((.((............))))))))).......)))))))).--- ( -15.11, z-score = -1.55, R) >droSec1.super_11 2419758 56 - 2888827 AGAAAAGGAGGCGACCGCGUAAAUACAGGAUUGGGUCGUUAGCGAUGUCUUUUUCA--- .(((((((((((((((.((............))))))))).......)))))))).--- ( -15.11, z-score = -1.55, R) >consensus AGAAAAGGAGGCGACCGCGUAAAUACAGGAUUGGGUCGUUAGCGAUGUCUUUUUCA___ .(((((((((((((((.((............))))))))).......)))))))).... (-14.30 = -14.08 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:58 2011