| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,479,686 – 22,479,778 |
| Length | 92 |
| Max. P | 0.591069 |
| Location | 22,479,686 – 22,479,778 |
|---|---|
| Length | 92 |
| Sequences | 10 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 78.09 |
| Shannon entropy | 0.45314 |
| G+C content | 0.42190 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -11.47 |
| Energy contribution | -11.82 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22479686 92 + 24543557 -CAGGGGCUUGGGCUAAAGUUUGUGCGCAUUUUAGCGUAGAAAAUGCAAUAAAUUAAGCAAAAUACUUGAGUCACCUCGAGCACC--GAGUUGCU------ -.((.((((((((((..(((((((..(((((((.......))))))).))))))).)))......((((((....))))))..))--))))).))------ ( -28.90, z-score = -2.26, R) >droSec1.super_11 2415558 92 + 2888827 -CAGAGGCUUGGGCUAAAGUUUGUGCGCAUUUUAGCGUAGAAAAUGCAAUAAAUUAAGCAAAAUAUUUGAGUCACCUCGAGCACC--GAGUUACU------ -.((..(((((((((..(((((((..(((((((.......))))))).))))))).)))......((((((....))))))..))--))))..))------ ( -25.00, z-score = -1.96, R) >droYak2.chr3L_random 4652440 92 + 4797643 -CAGGGGCUUGGGCCAAAGUUUUUGCGCAUUUUAGCGUAGAAAAUGCAAUAAAUUAAGCAAAAUACUUGAGUCACCUUGAGCACC--GAGCUCCU------ -.((((((((((((..((((((((((((......))))))))).(((..........)))...............)))..)).))--))))))))------ ( -32.30, z-score = -3.43, R) >droEre2.scaffold_4784 22149092 92 + 25762168 -CAGGGGCUUGGCCCAAAGUUUGUGCGCAUUUUGGCGUAGAAAAUGCAAUAAAUUAAGCAAAAUACUUGAGUCACCUUGAGCACC--GAGUUCCU------ -.((((((((((.....(((((((..(((((((.......))))))).)))))))..........((..((....))..))..))--))))))))------ ( -26.90, z-score = -1.50, R) >droAna3.scaffold_13337 22218556 80 + 23293914 -----CGGAGCAGCCAAAGCUGCCGAGCAUUUCAGCGUAGAAAAUGCAAUAAAUUAAAGAAAA-AUUCGAGACACCUAGAGUCCCU--------------- -----(((((((((....)))))...(((((((......).))))))................-.)))).(((.......)))...--------------- ( -15.90, z-score = -1.41, R) >dp4.chrXR_group8 149331 98 + 9212921 -CAGGGGCUCGGGUAAAAGUUUUUGCGCAUUUUAGCGUAGAAAAUGCAAUAAAUUAAGCAAAAUACUUGAGUCACCUUGAGCCUU--GAGUCUUGAGCCCU -..((((((((((...((((((((((((......))))))))).(((..........))).....((..((....))..)).)))--....)))))))))) ( -31.80, z-score = -2.85, R) >droPer1.super_80 168367 98 - 286535 -CAGGGGCUCGGGUAAAAGUUUUUGCGCAUUUUAGCGUAGAAAAUGCAAUAAAUUAAGCAAAAUACUUGAGUCACCUUGAGCCUG--GAGUCUUGAGCCCU -..((((((((((....(((((((((((......))))))))).(((..........))).....((..((....))..)).)).--....)))))))))) ( -30.70, z-score = -2.26, R) >droVir3.scaffold_13049 7956202 92 - 25233164 CAACGAGAGCUGUUCAAAGUUUUUGCGCAUUUUAGCGUAGAAAAUGCAAUAAAUUAAGCAAAAUACUUGAGUCACCUUGAGCCUU--GAGUCUU------- ...((((.(((........(((((((((......))))))))).(((..........)))...................))))))--)......------- ( -18.10, z-score = -0.11, R) >droMoj3.scaffold_6680 2457346 99 - 24764193 CGACGAGUGCUGUUCAAAGUUUCUGCGCAUUUCAGCGUAGAAAAUGCAAUAAAUUAAGCAAAAUACUCGAGUCACCUUGGGCCUU--GAGCCUCGAGCCCU ...((((((..........(((((((((......))))))))).(((..........)))...)))))).........((((.((--(.....))))))). ( -29.40, z-score = -2.21, R) >droGri2.scaffold_15110 14906230 94 + 24565398 CAGUGAGUACCGUUCAAAGUUUUUGCGCAUUUUAGCGUAGAAAAUGCAAUAAAUUAAGCAAAAUACUUGAGUCACCUUGAGCCUUCCGAGUCUU------- ..(..((....((((((..(((((((((......))))))))).(((..........)))................))))))))..).......------- ( -16.30, z-score = -0.17, R) >consensus _CAGGGGCUCGGGCCAAAGUUUUUGCGCAUUUUAGCGUAGAAAAUGCAAUAAAUUAAGCAAAAUACUUGAGUCACCUUGAGCCCC__GAGUCUCU______ ...................(((((((((......))))))))).(((..........))).....((((((....)))))).................... (-11.47 = -11.82 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:57 2011