| Sequence ID | dm3.chr2L |
|---|---|
| Location | 615,548 – 615,621 |
| Length | 73 |
| Max. P | 0.628190 |
| Location | 615,548 – 615,621 |
|---|---|
| Length | 73 |
| Sequences | 8 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 77.06 |
| Shannon entropy | 0.46678 |
| G+C content | 0.48373 |
| Mean single sequence MFE | -19.92 |
| Consensus MFE | -11.12 |
| Energy contribution | -10.71 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.628190 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 615548 73 - 23011544 UUCCCAACCUCUUGUUACGGCUCCGAUUUAGAUGCUGAGAUUUGCAUUAGAGAAGGUACCGUGAGGCACGAAU .......((((.....((((..((..(((.(((((........))))).)))..))..))))))))....... ( -18.70, z-score = -1.39, R) >droSim1.chr2L 621854 72 - 22036055 -UCCCAACCUCUUGUUACGGCUCCGAUUUAGAUGCUGAGAUUUGCAUUAGAGAAGGUACCGUGAGGCACGAAU -......((((.....((((..((..(((.(((((........))))).)))..))..))))))))....... ( -18.70, z-score = -1.47, R) >droSec1.super_14 598149 72 - 2068291 -UCCCAACCUCUUGUUACGGCUCCGAUUUAGAUGCUGAGAUUUGCAUUAGAGAAGGUACCGUGAGGCACGAAU -......((((.....((((..((..(((.(((((........))))).)))..))..))))))))....... ( -18.70, z-score = -1.47, R) >droYak2.chr2L 605146 72 - 22324452 -UUCCAACCUCUUGUUACGGCUCCGAUUUAGAUGCUGAGAUUUGCAUUAGAGAAGGUACCGUGAGGCACGAAU -(((...((((.....((((..((..(((.(((((........))))).)))..))..))))))))...))). ( -19.20, z-score = -1.65, R) >droEre2.scaffold_4929 673248 72 - 26641161 -UUCCAACCUCUUGUUACGGCUCCGAUUUAGAUGCUGAGAUUUGCAUUAGGGAAGGUACCGUGAGGCACGAAU -(((...((((.....((((..((..((..(((((........)))))..))..))..))))))))...))). ( -18.50, z-score = -0.81, R) >droAna3.scaffold_12916 1615482 65 - 16180835 ---UUUGCCUUCCGUCCUGCCUCCAGUCUGGUU-CUGCA---UCCA-UAGAGCUGGCCACGUGAGGCACGAGU ---...........((.((((((..(((..(((-(((..---....-))))))..)..))..)))))).)).. ( -20.20, z-score = -0.73, R) >dp4.chr4_group3 2578761 72 + 11692001 -UGCUCUUUGCUGUUUGUGCCACAGAUUUAGAUGCAGCGAUUUGCAUUAGAGAGGAGAGCGUGUGGCACGAAU -.((.....)).((((((((((((..(((.(((((((....))))))).))).(.....).)))))))))))) ( -22.70, z-score = -1.50, R) >droPer1.super_8 3669188 72 + 3966273 -UGCUCUUUGCUGUUUGUGCCACAGAUUUAGAUGCAGCGAUUUGCAUUAGAGAGGAGAGCGUGUGGCACGAAU -.((.....)).((((((((((((..(((.(((((((....))))))).))).(.....).)))))))))))) ( -22.70, z-score = -1.50, R) >consensus _UCCCAACCUCUUGUUACGGCUCCGAUUUAGAUGCUGAGAUUUGCAUUAGAGAAGGUACCGUGAGGCACGAAU .......((((.....((((..((..(((.(((((........))))).)))..))..))))))))....... (-11.12 = -10.71 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:21 2011