| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,477,048 – 22,477,123 |
| Length | 75 |
| Max. P | 0.859255 |
| Location | 22,477,048 – 22,477,123 |
|---|---|
| Length | 75 |
| Sequences | 6 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 69.63 |
| Shannon entropy | 0.54620 |
| G+C content | 0.56608 |
| Mean single sequence MFE | -20.78 |
| Consensus MFE | -11.85 |
| Energy contribution | -12.63 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22477048 75 - 24543557 -------GCCCGAACUUUUUCGGGGAAGGAGGACUUUCCUUC---CUUCUCCUCCGGCGCUUUUCUCGCCCUGCACACACACUGG -------((............(((((((((((......))))---)))))))...((((.......))))..))........... ( -24.40, z-score = -2.45, R) >droSim1.chr3L_random 1013355 78 - 1049610 -------GCCCGAACUUUUCCGGGGAAGGAGGACUUUCCUUCCUCCUCCUCCUCCGGCGCUUUUCUCGCCCUGCACAAACACUGG -------((..(((.....((((((.(((((((..........))))))).)))))).....)))..))................ ( -23.60, z-score = -1.44, R) >droSec1.super_11 2412887 78 - 2888827 -------GCCCGAACUUUUCCGGGGAAGGAGGACUUUCCUUCCUCCUCCUCCUCCGGCGCUUUUUUCGCCCUGCACAAACACUGG -------((.((((.....((((((.(((((((..........))))))).)))))).......))))....))........... ( -23.90, z-score = -1.59, R) >droYak2.chr3L 1261898 73 + 24197627 ------UGCCGAAACUUUUCCGGAGAGGGAGGACUUUCC------UUCCUCCUCCGGCGCUUUUCUCGCCCUGCAUAAACACUGG ------(((.(..........(((((((((((.....))------))))).))))((((.......))))).))).......... ( -25.30, z-score = -2.38, R) >droEre2.scaffold_4784 22146245 79 - 25762168 UACGGCUACGGGUACUUUUCCGGGGAAGGAGCGCUUUCC------CAGCUCCUCCGGCGCUUUUCUCGCCCUGCACAAACACUGG ....((..((((......)))).(((.(((((.......------..))))))))((((.......))))..))........... ( -23.50, z-score = 0.15, R) >droWil1.scaffold_180698 4096748 58 + 11422946 ---------------UGUGCCACUACACGAGUUCUCU------------UCCCCGUCUACUUCUUUGCCAUUGCAUAAACAUUGU ---------------(((((.....((.((((...(.------------.....)...))))...)).....)))))........ ( -4.00, z-score = 0.47, R) >consensus _______GCCCGAACUUUUCCGGGGAAGGAGGACUUUCC______CUCCUCCUCCGGCGCUUUUCUCGCCCUGCACAAACACUGG ...................(((((((.(((((...............))))))))((((.......))))...........)))) (-11.85 = -12.63 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:57 2011