| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,457,817 – 22,457,908 |
| Length | 91 |
| Max. P | 0.780975 |
| Location | 22,457,817 – 22,457,908 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 85.21 |
| Shannon entropy | 0.20299 |
| G+C content | 0.26440 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -12.03 |
| Energy contribution | -11.70 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.780975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22457817 91 + 24543557 UUUAUAUGGGAUGCAGUUUGUUUCU----AGAUUUUUAUUUAAAUAAAAAAGAAAAACAAUCCAUAAAUGGGUAAGUCAAAAUUGGGUCAUCAGG ......((((((.((((((.(((((----...(((((((....))))))))))))....(((((....)))))......)))))).))).))).. ( -15.90, z-score = -1.62, R) >droSim1.chr3L 310149 94 - 22553184 UUUAUAUAGGACGCAGUUUGUUGUUUAU-AGAUUUUUAUUUAAGUAUAAAAGAAAAACAAUCUAUAAAUGGGUACAUCAAAAUUGGGUCAUUAGG .........(((.((((((.(..(((((-((((((((((......)))))........))))))))))..)........)))))).)))...... ( -16.60, z-score = -2.35, R) >droSec1.super_365 11200 95 - 14679 UUUAUAUAGGAUGCAGUUUGUUGUUUAUAGGUUUUUUAUUUCAAUAAAAAAGAAAAACAAUCCAUAAAUGGGUAAGUGAAAAUUGCGUCAUCACA .........((((((((((.(..(((((..(((((((.(((......))).)))))))...(((....))))))))..)))))))))))...... ( -21.20, z-score = -3.20, R) >consensus UUUAUAUAGGAUGCAGUUUGUUGUUUAU_AGAUUUUUAUUUAAAUAAAAAAGAAAAACAAUCCAUAAAUGGGUAAGUCAAAAUUGGGUCAUCAGG .........(((.((((((.............(((((((....))))))).........(((((....)))))......)))))).)))...... (-12.03 = -11.70 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:52 2011