| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,446,961 – 22,447,057 |
| Length | 96 |
| Max. P | 0.641834 |
| Location | 22,446,961 – 22,447,057 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 121 |
| Reading direction | reverse |
| Mean pairwise identity | 67.89 |
| Shannon entropy | 0.61082 |
| G+C content | 0.47982 |
| Mean single sequence MFE | -27.48 |
| Consensus MFE | -9.18 |
| Energy contribution | -8.19 |
| Covariance contribution | -0.98 |
| Combinations/Pair | 1.65 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22446961 96 - 24543557 CUAGGACCCGGACAUCAAAAAUGCAACCAAGCAUAAAUUUCGGGGCUCUGCGGC---------GGCCCCCAUUGAUUUAUGCGCCUU-GUCCAAGGACAAACAUGC--------------- ((.((((..((.(((.....))).......(((((((((..((((((.......---------))))))....))))))))).))..-)))).))...........--------------- ( -28.10, z-score = -0.86, R) >droSim1.chr3L_random 1010312 96 - 1049610 CUAGGUUCCGGACAUCAAAAAUGCAACCAAGCAUAAAUUUCGGGGCUCUGCGGC---------AGCCCCCGAUGAUUUAUGCGCCUU-GUCCAAGGACAAACAUGC--------------- ...((((.((...........)).))))..((((((((((((((((((....).---------)).)))))).)))))))))...((-(((....)))))......--------------- ( -30.20, z-score = -1.69, R) >droSec1.super_11 2383699 96 - 2888827 CUAGGUCCCGGACAUCAAAAAUGCAACCAAGCAUAAAUUUCGGGGCUCUGCGGC---------AGCCCCCGAUGAUUUAUGCGCCUU-GUCCAAGGACAAACAUGC--------------- ....((((.(((((.......((....)).((((((((((((((((((....).---------)).)))))).)))))))))....)-))))..))))........--------------- ( -32.80, z-score = -2.42, R) >droYak2.chr3L 22894627 96 - 24197627 CUAGGUCCCGGACAUCAAAAAUGCAACCAAGCAUAAAUUUCGGGGCUCUGCGGC---------AGCCCCCAAUGAUUUAUGCGCCUU-GUCCAAGGACAAACAUGC--------------- ....((((.(((((.......((....)).(((((((((..(((((((....).---------))))))....)))))))))....)-))))..))))........--------------- ( -32.00, z-score = -2.38, R) >droEre2.scaffold_4784 22117094 96 - 25762168 CUAAGUCCCGGACAUCAAAAAUGCAACCAAGCAUAAAUUUCGGAGCUCUGCGGC---------AGCCCCCAAUGAUUUAUGCGCCUU-GUCCAAGGACAAACAUGC--------------- ....((((.(((((.......((....)).(((((((((..((.((((....).---------))).))....)))))))))....)-))))..))))........--------------- ( -25.30, z-score = -1.65, R) >droAna3.scaffold_13337 22182378 107 - 23293914 ---CCCACAGAGCUUCAGAAAUGCAACCAAGCAUAAAUUUCGGGACUCCGCCGC---------AGCCCCCGAUGAUUUAUGCGCCUU-ACUUAAGGACAAA-ACGUCGCAAACACACCCGA ---..................(((.((...((((((((((((((.....((...---------.)).))))).)))))))))(((((-....)))).)...-..)).)))........... ( -23.50, z-score = -1.70, R) >dp4.chrXR_group8 112088 102 - 9212921 ----GGGUGGAGCAUCAAAAAUGCAACCAAGCAUAAAUUUCGGGGCUCUGCAGC---------AGCUCU--AUGAUUUAUGCGUCCU-GCUCAAGGACAAA-ACGUCGCCAGCACAUCC-- ----.(((((.((((.....))))......(((((((((..(((((((....).---------))))))--..)))))))))(((((-.....)))))...-...))))).........-- ( -34.80, z-score = -2.89, R) >droPer1.super_80 129704 102 + 286535 ----GGGUGGAGCAUCAAAAAUGCAACCAAGCAUAAAUUUCGGGGCUCUGCAGC---------AGCUCU--AUGAUUUAUGCGUCCU-GCUCAAGGACAAA-ACGUCGCCAGCACAUCC-- ----.(((((.((((.....))))......(((((((((..(((((((....).---------))))))--..)))))))))(((((-.....)))))...-...))))).........-- ( -34.80, z-score = -2.89, R) >droWil1.scaffold_180698 4052795 104 + 11422946 CUGAGGCAGAGGCAUCAAAAAUGCAACGAAGCAUAAAUUUCGGUGCUCUACUACAGGCCCCAUAGAGUCAGAUGAUUUAUGCGCAAUGGCUCAAGGACAAAAAC----------------- .((((.(((..((((.....))))..)...(((((((((((...((((((............))))))..)).)))))))))....)).))))...........----------------- ( -25.40, z-score = -1.01, R) >droVir3.scaffold_13049 7918670 85 + 25233164 CUUCGACGUGGGCAUUAGAUAUGCAACGAAGCAUAAAUCUGGA-GCUCUUC--------------AGUAUUAUGAAUUAUGCGCAAU-GCUCAAGGACAAA-------------------- .(((....((((((((.(....(((......(((((..(((((-....)))--------------))..))))).....))).))))-))))).)))....-------------------- ( -19.10, z-score = -0.61, R) >droMoj3.scaffold_6680 2416334 85 + 24764193 CUUCGACAUGAGCGUCAGUUAUGCAACGAAGCAUAAAUUUCCA-GCGUUUC--------------GGUCAUGUGAGUUAUGCGCAAU-GCUCAAGGACAAA-------------------- ......(.(((((((...((((((......)))))).......-((((...--------------(.((....)).)...)))).))-))))).)......-------------------- ( -20.70, z-score = -0.28, R) >droGri2.scaffold_15110 14864837 84 - 24565398 -UUUGCCAUAAGCAUCAGAAAUGCAAUGAAGCAUAAGUCUGGA-GAGAUUC--------------AGACGUAUGAAUUAUGCGAAAU-GCUCAAGGACAAA-------------------- -.(((((....((((.....))))..(((.((((..(((((((-....)))--------------))))(((((...)))))...))-))))).)).))).-------------------- ( -23.10, z-score = -2.93, R) >consensus CUAGGUCCCGGGCAUCAAAAAUGCAACCAAGCAUAAAUUUCGGGGCUCUGCGGC_________AGCCCCCGAUGAUUUAUGCGCCUU_GCUCAAGGACAAA_AUGC_______________ .........((((..((....)).......((((((.((..(((......................)))....)).))))))......))))............................. ( -9.18 = -8.19 + -0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:52 2011