| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,446,811 – 22,446,914 |
| Length | 103 |
| Max. P | 0.971159 |
| Location | 22,446,811 – 22,446,914 |
|---|---|
| Length | 103 |
| Sequences | 9 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 87.63 |
| Shannon entropy | 0.26888 |
| G+C content | 0.41728 |
| Mean single sequence MFE | -27.93 |
| Consensus MFE | -20.16 |
| Energy contribution | -20.29 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.72 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.971159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22446811 103 + 24543557 UCCGACCAAAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGUCGCAUAAUUGCUGACUUCUUUCACACAUUCGCACACAUCAUUGAAGCGGGAUGGACU-- ((((.((..((((((((((....((..((....(((...........))).....))..))....))))))))))(((...((....))..))))).))))..-- ( -30.40, z-score = -3.32, R) >droSim1.chr3L_random 1010162 103 + 1049610 UCCGACCAAAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCGCACACAUCAUUGGAGCGGGAUGGACU-- ((((.((..((((((((((....((..((....(((...........))).....))..))....))))))))))(((.(.((....))).))))).))))..-- ( -31.80, z-score = -3.46, R) >droSec1.super_11 2383549 103 + 2888827 UCCGACCAAAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCGCACACAUCAUUGGAGCGGGAUGGACU-- ((((.((..((((((((((....((..((....(((...........))).....))..))....))))))))))(((.(.((....))).))))).))))..-- ( -31.80, z-score = -3.46, R) >droYak2.chr3L 22894477 103 + 24197627 UCCGACCAAAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCGCACACAUCAUUGGAGCGGGCUGAGCU-- ((.(.((..((((((((((....((..((....(((...........))).....))..))....))))))))))(((.(.((....))).)))))).))...-- ( -27.70, z-score = -1.68, R) >droEre2.scaffold_4784 22116944 103 + 25762168 UCCGACCGAAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCGCACACAUCAUUGGAGCGGCAUGGACU-- ((((.(((((.((((((((....((..((....(((...........))).....))..))....)))))))))))((.(.((....))).))))..))))..-- ( -29.20, z-score = -2.50, R) >droAna3.scaffold_13337 22182256 91 + 23293914 UCCGUCCACAAUGUGUGAAUUUUGUUAGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCCCACAUUCGCACACAUCAUUGCA-------------- .........((((((.(((....((((((....(((...........))).....))))))....))).)))))).(((........))).-------------- ( -19.70, z-score = -2.84, R) >dp4.chrXR_group8 111916 105 + 9212921 UCCGUCCACAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCACACACAUCAUUGGACUGGUCAGAGGAUU .(((((((.((((((((((....((..((....(((...........))).....))..))....))))))))))............))))).)).......... ( -27.02, z-score = -2.05, R) >droPer1.super_80 129525 105 - 286535 UCCGUCCACAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCACACACAUCAUUGGACUGGUCAGAGGAUU .(((((((.((((((((((....((..((....(((...........))).....))..))....))))))))))............))))).)).......... ( -27.02, z-score = -2.05, R) >droVir3.scaffold_13049 7918550 99 - 25233164 AAUGGCCACAAUGUGUGAAUUUUGUUGGAUUAUUGCUUUUGUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCUCACACAUGACUGUGCGUGGAUU------ .....((((((((((((((....(((((.....(((....)))..))(((....))).)))....))))))))))....((((....)))).))))...------ ( -26.70, z-score = -1.91, R) >consensus UCCGACCAAAAUGUGUGAAUUUUGUUGGCUUAUUGCUUUUCUAUGCCGCAUAAUUGCUGACUUCUUUCACACAUUCGCACACAUCAUUGGAGCGGGAUGGACU__ .........((((((((((....((((((....(((...........))).....))))))....)))))))))).............................. (-20.16 = -20.29 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:51 2011