| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,440,098 – 22,440,151 |
| Length | 53 |
| Max. P | 0.722732 |
| Location | 22,440,098 – 22,440,151 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 75.66 |
| Shannon entropy | 0.46542 |
| G+C content | 0.57528 |
| Mean single sequence MFE | -10.33 |
| Consensus MFE | -6.64 |
| Energy contribution | -6.92 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22440098 53 + 24543557 CUUGGACUAGCUGCCACAC-CCCACGAAGCGCCAACCCCACGCGGUAGCCACUC .........((((((.(..-.....)..(((.........)))))))))..... ( -10.30, z-score = -0.05, R) >droSim1.chr3L 21750485 53 + 22553184 CUUGGACUAGCUGCCACAC-CCCACCAAGCACCAACCCCAUUCGGUAGCUACUC ....((.((((((((....-.......................)))))))).)) ( -10.33, z-score = -1.46, R) >droSec1.super_11 2376874 53 + 2888827 CUUGGACUAGCUGCCACAC-CCCACCAAGCACCAACCCCAUUCGGUAGCUACUC ....((.((((((((....-.......................)))))))).)) ( -10.33, z-score = -1.46, R) >droYak2.chr3L 22881037 50 + 24197627 CUUGAACUAGCUGCCACAC-CCCA---AGCGCGAACCCCACUUGGUAGCUAUUC ...(((.(((((((((...-....---...............)))))))))))) ( -11.25, z-score = -1.99, R) >droEre2.scaffold_4784 22110252 50 + 25762168 CUUGGACUAGCUGCCACAC-CCCA---AGCGCGAACCCCACUUGGUAGCUAUUC ....((.(((((((((...-....---...............))))))))).)) ( -11.35, z-score = -1.03, R) >droGri2.scaffold_15110 14857460 54 + 24565398 CUUGGAUUGUUUGCCUUGCGCCUUUGCAACUCACACCUCCACUGUCUGCUAUUU ..((((..((.((..(((((....)))))..)).)).))))............. ( -8.40, z-score = -0.90, R) >consensus CUUGGACUAGCUGCCACAC_CCCAC_AAGCGCCAACCCCACUCGGUAGCUACUC .......((((((((............................))))))))... ( -6.64 = -6.92 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:50 2011