| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,136,378 – 6,136,511 |
| Length | 133 |
| Max. P | 0.544555 |
| Location | 6,136,378 – 6,136,511 |
|---|---|
| Length | 133 |
| Sequences | 6 |
| Columns | 156 |
| Reading direction | forward |
| Mean pairwise identity | 76.64 |
| Shannon entropy | 0.41756 |
| G+C content | 0.42429 |
| Mean single sequence MFE | -34.52 |
| Consensus MFE | -16.16 |
| Energy contribution | -17.22 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.544555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6136378 133 + 23011544 GCCGAGUUGGCGGGAG--------CAGAUGGCGGUAAAAAGCUGGUGAUACGAUUUAAUUGCAAAUAAAGUAAUUUUUAAUUGAAUAGCCGCCAAAGUUGAUGGAAAAUC---GUUUU------GGCCAACUG--CAUGCGCACAGGCAAAC---- (((.(((((((.((((--------(...(((((((.......((......))(((((((((.((((......)))).))))))))).))))))).....(((.....)))---)))))------.)))))))(--(....))...)))....---- ( -43.00, z-score = -2.90, R) >droEre2.scaffold_4929 15060478 133 + 26641161 GUCGAGUUGGCGGGAG--------CAGAUGGCGGUAAAAAGCUGGUGAUACGAUUUAAUUGCAAAUAAAGUAAUUUUUAAUUGAAUAGCCGCCAAAGUUGAUGGAAAAAC---GCUUU------GGCCAACUG--CACGCACACAGACAGAC---- (((.(((((((.((((--------(...(((((((.......((......))(((((((((.((((......)))).))))))))).)))))))..(((........)))---)))))------.)))))))(--....).....)))....---- ( -40.60, z-score = -3.10, R) >droYak2.chr2L 15546986 141 - 22324452 GCCGAGUUGGCGGGAGUUGGAGCGCAGAUGGCGGUAAAAAGCUGGUGAUACGAUUUAAUUGCAAAUAAAGUAAUUUUUAAUUGAAUGUCCGCCAAAGUUGAUGGAAAAAC---GUUUU------GGCCAACUG--UAUGCACACAGGCGAGC---- ((((..(..((....))..)..)((((.((((.....((((((((((..((.(((((((((.((((......)))).))))))))))).)))))..(((........)))---)))))------.)))).)))--).........)))....---- ( -37.30, z-score = -0.40, R) >droSec1.super_5 4206515 102 + 5866729 UCCGAGUUGGCGGGAG--------CAGAUGGCGGUAAAAAGCUGGUGAUACGAUUUAAUUGCAAAUAAAGUAAUUUUUAAUUGAAUAGCCGCCAAAGUUGAUGGAAAAUC---------------------------------------------- ((((.....((....)--------)...(((((((.......((......))(((((((((.((((......)))).))))))))).))))))).......)))).....---------------------------------------------- ( -24.00, z-score = -1.38, R) >droSim1.chr2L 5923855 133 + 22036055 GCCAAGUUGGCGGGAG--------CAGAUGGCGGUAAAAAGCUGGUGAUACGAUUUAAUUGCAAAUAAAGUAAUUUUUAAUUGAAUAGCCGCCAAAGUUGAUGGAAAAUC---GUUUU------GGCCAACUG--CAUGCACACAGGCCAAC---- (((.(((((((.((((--------(...(((((((.......((......))(((((((((.((((......)))).))))))))).))))))).....(((.....)))---)))))------.)))))))(--....).....)))....---- ( -39.50, z-score = -1.94, R) >droWil1.scaffold_180708 4913784 133 - 12563649 ------------GCAG---------AAAUAGCAGCUGAGUA-UGGC-AUACGAUUUAAUUACAAAUAAAGUAAUUUUUAAUUGAAUAACCGCCAAAGUUGAUGGAAAAACCCCGUUUUCGACCAGGCCAACUGACCCCACACACACACAGACACAC ------------(((.---------...).)).((((.((.-((((-.....(((((((((.((((......)))).)))))))))....)))).(((((.(((.(((((...)))))...)))...)))))............)).))).).... ( -22.70, z-score = -1.42, R) >consensus GCCGAGUUGGCGGGAG________CAGAUGGCGGUAAAAAGCUGGUGAUACGAUUUAAUUGCAAAUAAAGUAAUUUUUAAUUGAAUAGCCGCCAAAGUUGAUGGAAAAAC___GUUUU______GGCCAACUG__CAUGCACACAGGCAAAC____ ......(((((((..................((((.....))))......(((((.((((((.......))))))...))))).....)))))))............................................................. (-16.16 = -17.22 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:29 2011