| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,404,049 – 22,404,145 |
| Length | 96 |
| Max. P | 0.702049 |
| Location | 22,404,049 – 22,404,145 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 88.00 |
| Shannon entropy | 0.16529 |
| G+C content | 0.28389 |
| Mean single sequence MFE | -18.80 |
| Consensus MFE | -14.94 |
| Energy contribution | -15.50 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.702049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22404049 96 - 24543557 AAAUACUAAGCCCUUGUUGUGAUUUCCUAUUGAAGACAAAUUCUUAGUUGAUCGUGAAAGGUGAAAUUUCAUUCACU----GUUUAAUUUUUGAUAUUUG ......(((((.....(..(((((..(((..(((......))).)))..)))))..)..((((((......))))))----))))).............. ( -16.60, z-score = -1.13, R) >droSim1.chr3L 16026634 100 + 22553184 AAAUACAAAAUCCUUGUUGCGAUUCCCUAUUGAAGACGAAUUCAUAGUUGAUCGUGCAAGGUGAAAAUUUAUUCACUUUUAUUUUAUUUUUUGAUAUUUG ((((((((((..(((((.((((((..((((.(((......)))))))..)))))))))))(((((......)))))............))))).))))). ( -23.00, z-score = -3.39, R) >droSec1.super_11 2340649 100 - 2888827 AAAUACUAAAUCCUUGUUGCGAAUCCCUAUUGAAGACGAAUUCAUAGUUGAUCGUGCAAGGUGAAAAUUUAUUCACUUUUAUUUAAUUUUUUGAUAUUUG (((((.((((..(((((.((((.(..((((.(((......)))))))..).)))))))))(((((......))))).............)))).))))). ( -16.80, z-score = -1.25, R) >consensus AAAUACUAAAUCCUUGUUGCGAUUCCCUAUUGAAGACGAAUUCAUAGUUGAUCGUGCAAGGUGAAAAUUUAUUCACUUUUAUUUUAUUUUUUGAUAUUUG (((((..(((..(((((.((((((..((((.(((......)))))))..)))))))))))(((((......))))).............)))..))))). (-14.94 = -15.50 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:42 2011