| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,401,066 – 22,401,166 |
| Length | 100 |
| Max. P | 0.705747 |
| Location | 22,401,066 – 22,401,166 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 73.03 |
| Shannon entropy | 0.44082 |
| G+C content | 0.49620 |
| Mean single sequence MFE | -38.20 |
| Consensus MFE | -14.46 |
| Energy contribution | -17.77 |
| Covariance contribution | 3.31 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.705747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22401066 100 + 24543557 CUUUUUCAGUUAAAAUGCGUCGCUCUCUC--AUUUAUUCUGAUACUGC-GCAUGAUUUGUGAGAGAGAGAGCGGUCGCGCACCAGCGUUGUCCAUUUAGCUAA .......(((((((..((.((.(((((((--((..(((.((.......-.)).)))..))))))))).))))((.(((((....))).)).)).))))))).. ( -32.90, z-score = -2.47, R) >droYak2.chr3L 22830561 95 + 24197627 -AUUUUCUGCGCAUGU-CGUGGCGAUGGC-----UGCGCUGCCGCUGCAGCAUCGU-CGGGAGAACGUGAGCGGGAGAGCACCAGCGUUGCCUAUUUAGCUAA -.((((((((.(((((-(.((((((((.(-----(((((....)).))))))))))-)).))...)))).))))))))((....))((((......))))... ( -36.90, z-score = -0.04, R) >droSec1.super_11 2337637 99 + 2888827 -UUUUUCUGUUCAAAUUUAUCGCUCUCUC--AUGCAUGCUGUUGCUGC-GCAUGGCGUGAGAGAGUGCGAGCGGGAGAGCACAAGCGUUGUCAAUUUAGCUAA -.((((((((((........(((((((((--((((((((.((....))-)))).))))))))))))).))))))))))((....))((((......))))... ( -38.20, z-score = -2.44, R) >droSim1.chr3L 16023638 102 - 22553184 GUUCUUCAGUUCAAAUUUAUGGCUCUCUCUCAUGCAUGCUGUUUCUGC-GCAUUGCGUGAGAGAGAGCGAGCGGGAGAGCACAAGCGUUGUCAAUUUAGCUAA (((((((.((((.........((((((((((((((((((.((....))-))).))))))))))))))))))).)))))))...(((............))).. ( -44.80, z-score = -4.45, R) >consensus _UUUUUCAGUUCAAAUUCAUCGCUCUCUC__AUGCAUGCUGUUGCUGC_GCAUGGCGUGAGAGAGAGCGAGCGGGAGAGCACAAGCGUUGUCAAUUUAGCUAA ..((((((((((.........((((((((..((((((((.((....)).)))).))))..))))))))))))))))))((....))((((......))))... (-14.46 = -17.77 + 3.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:42 2011