| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,389,273 – 22,389,399 |
| Length | 126 |
| Max. P | 0.662350 |
| Location | 22,389,273 – 22,389,399 |
|---|---|
| Length | 126 |
| Sequences | 5 |
| Columns | 127 |
| Reading direction | reverse |
| Mean pairwise identity | 83.83 |
| Shannon entropy | 0.26822 |
| G+C content | 0.41257 |
| Mean single sequence MFE | -29.81 |
| Consensus MFE | -22.28 |
| Energy contribution | -23.44 |
| Covariance contribution | 1.16 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662350 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22389273 126 - 24543557 GCAUCUUAAAGAUGCAAUCUGGCUGGAAACAUCUGCAUUACAUGCCAACCAACUC-AAAGCCGACCGCAGUAAGGGCAAUUCCGAUUGGCUUGAAUUUGAAGAAUCUUUAGGUAGCAAUAACUACUG ((..(((((((((.(....((((((....))..((.....)).))))..(((...-.(((((((.((.(((.......))).)).)))))))....)))..).)))))))))..))........... ( -27.90, z-score = -0.21, R) >droEre2.scaffold_4784 22059520 108 - 25762168 GCAUCUUAAAGAUGCAAUCUGGCUGGAAACAUAUGCAUUACAU----------------GCCGACCGCAGUAAGGGCAAUUCAGAUUGGCUUAAAUUUGAAGAAUCCGUAAGAAACGACGACUU--- (((((.....)))))..(((.((.(((......(((.((((.(----------------((.....)))))))..))).((((((((......))))))))...))))).)))...........--- ( -27.30, z-score = -1.82, R) >droYak2.chr3L 22818297 108 - 24197627 GCAUCUUAAAGAUGCAAUCUGGCUGGAAACAUAUGCAUUACAU----------------GCCAACCGCAGUAAGGGCAAUUCAGAUUGGCUUAAAUUGGAAGAAUCUUUAAGAAACGAUCAUUU--- ...((((((((((.((((((((.((....))..(((.((((.(----------------((.....)))))))..)))..)))))))).(((.......))).))))))))))...........--- ( -29.40, z-score = -2.70, R) >droSec1.super_11 2325829 126 - 2888827 GCAUCUUAAAGAUGCAAUCUGGCU-GAAACAUCUGCAUUACAUGCUAACCAACUCAAAAGCCGACCGCAGCAAGGGCAAUUCAGAUUGGCUUCAAUUUGAAGAAUCUUUAGGAAGCAAUGACUACUG ((.((((((((((((....(((((-.........((((...)))).............))))).((.......))))..(((((((((....)))))))))..)))))))))).))........... ( -31.65, z-score = -1.53, R) >droSim1.chr3L 21700483 127 - 22553184 GCAUCUUAAAGAUGCAAUCUGGCUGGAAACAUCUGCAUUACAUGCUAACCAACUCAAAAGCCGACCGCAGCAAGGGCAAUUCAGAUUGGCUUAAAUUUGAAGAAUCUUUAGGAAGCAAUGACUACUG ((.((((((((((((....((((((....)....((((...)))).............))))).((.......))))..((((((((......))))))))..)))))))))).))........... ( -32.80, z-score = -1.87, R) >consensus GCAUCUUAAAGAUGCAAUCUGGCUGGAAACAUCUGCAUUACAUGC_AACCAACUC_AAAGCCGACCGCAGUAAGGGCAAUUCAGAUUGGCUUAAAUUUGAAGAAUCUUUAGGAAGCAAUGACUACUG ((.((((((((((.(((((((((((....))...)).......................(((............)))....))))))).(((.......))).)))))))))).))........... (-22.28 = -23.44 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:38 2011