| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,388,474 – 22,388,588 |
| Length | 114 |
| Max. P | 0.562240 |
| Location | 22,388,474 – 22,388,588 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.65 |
| Shannon entropy | 0.42023 |
| G+C content | 0.41586 |
| Mean single sequence MFE | -22.06 |
| Consensus MFE | -15.09 |
| Energy contribution | -15.37 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562240 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22388474 114 + 24543557 CGAGAUGUUGACAUUU----CUGUUCACCCCAGUGACUCGUAAAGUAUUUCCAUUCAUCUGCGUUAUUUCACAAGUAAUUAAAAUUUUUCCCACAUAAAAUCUCGAGGGACCGAGUCC .((((((....)))))----).............((((((......................((((((.....)))))).........((((..............)))).)))))). ( -17.94, z-score = 0.22, R) >droAna3.scaffold_13337 22124523 105 + 23293914 CAAGAUGACGACAUUUCAUUUCCUUUGACCCUGGGGCCCGGCAGACAUUUCCA------------AUUUCACAAGUAAUUAAAAUUUGUCCCACAACAGACCUCGGGGGACCGGGCC- ..((((((.......))))))((.........))(((((((........(((.------------.....((((((.......))))))(((............)))))))))))))- ( -23.10, z-score = 0.91, R) >droEre2.scaffold_4784 22058672 114 + 25762168 CGAGAUGUUGACAUUU----UCGUUCACCCCAGUGACUCAUAAGGCAUUUCCAUUCAUCUGCAUUAUAUCCCAAGUAAUUAAAAUUUGUCCCACAUCAAAUCCCGUGGGAACGAGUCC (((((((....)).))----)))...........(((((((((.(((............))).))))....(((((.......)))))((((((..........))))))..))))). ( -21.00, z-score = -0.55, R) >droYak2.chr3L 22817514 114 + 24197627 CGAGAUGUUGACAUUU----UCGUUCACCCCAGUGACUCAUAAAGCAUUUUGAUUCAUCUGCAUUAUUUCCCAAGUAAUUAAAAUCUGUCCCACAUAAAAUCUCUUGGGACCGAGUCU (((((((....)).))----)))...........(((((....((.(((((((((...((.............)).)))))))))))((((((............)))))).))))). ( -21.62, z-score = -1.05, R) >droSec1.super_11 2325019 100 + 2888827 CGAGAUGUUGACAUUU----CCGUUUACCCAAGUGACUCAUAAAUAAU------------GCUUUA--UCACAAGUAAUUAAAAUUUGUCCCACAUAACAUCUCGUGGGACCGAGUCC .((((((....)))))----).............(((((........(------------((((..--....)))))..........(((((((..........))))))).))))). ( -25.30, z-score = -3.20, R) >droSim1.chr3L_random 1008213 98 + 1049610 CGAGAUGUUGACAUUU----CCGUUUACCCCAGUGACUCAUAAAGCAU----------------UAUUUCACAAGUAAUUAAAAUUUGUCCCACAUAACAUCUCGUGGGACCGAGUCC .((((((....)))))----).............(((((.......((----------------((((.....))))))........(((((((..........))))))).))))). ( -23.40, z-score = -2.71, R) >consensus CGAGAUGUUGACAUUU____CCGUUCACCCCAGUGACUCAUAAAGCAUUUCCA_______GC_UUAUUUCACAAGUAAUUAAAAUUUGUCCCACAUAAAAUCUCGUGGGACCGAGUCC ..(((((....)))))..................(((((................................(((((.......)))))((((((..........))))))..))))). (-15.09 = -15.37 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:37 2011