| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,376,001 – 22,376,094 |
| Length | 93 |
| Max. P | 0.799258 |
| Location | 22,376,001 – 22,376,094 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 78.61 |
| Shannon entropy | 0.43194 |
| G+C content | 0.42743 |
| Mean single sequence MFE | -27.60 |
| Consensus MFE | -15.71 |
| Energy contribution | -15.94 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.799258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22376001 93 + 24543557 ------------UGCUUUUUUCGUGGCUGUCAGAACUGACAAACGCAAAUGAUUUAUGUGUGU-UUGCAUGCGUGUAAAUGUCAUUAA--GAGGGUGAGUCUGCCCCG------- ------------..........(((..(((((....)))))..))).((((((.((((((((.-...)))))))).....))))))..--(.((((......))))).------- ( -26.60, z-score = -1.62, R) >droSim1.chr3L_random 995657 88 + 1049610 ------------UGCUUUUU-CGUGGCUGUCCGAACUGACAAACGCAAAUGAUUUAUGUGUGU-UUGCAUGCGUGUAAAUGUCAUUAA--GAGGGUGAGUCUGC----------- ------------.(((((((-.(((..((((......))))..))).((((((.((((((((.-...)))))))).....)))))).)--))))))........----------- ( -21.80, z-score = -0.45, R) >droSec1.super_11 2312317 89 + 2888827 ------------UGCUUUUUUCGUGGCUGUCAGAACUGACAAACGCAAAUGAUUUAUGUGUGU-UUGCAUGCGUGUAAAUGUCAUUAA--GAGGGUGAGUCUGC----------- ------------.((((((((.(((..(((((....)))))..))).((((((.((((((((.-...)))))))).....))))))))--))))))........----------- ( -24.90, z-score = -1.44, R) >droYak2.chr3L 22802755 93 + 24197627 ------------UGCUUUUUUCGUGGCUGUCAGAAAUGACAAACGCAAAUGAUUUAUGUGUGU-UUGCAUGCGUGUAAAUGUCAUUAA--GAGGGUGAGUCCGCUUCG------- ------------.((((((((.(((..(((((....)))))..))).((((((.((((((((.-...)))))))).....))))))))--))))))............------- ( -26.80, z-score = -1.81, R) >droEre2.scaffold_4784 22046225 93 + 25762168 ------------UGCUUUUUUCGUGGCUGUCAGAACUGACAAACGCAAAUGAUUUAUGUGUGU-UUGCAUGCGUGUAAAUGUCAUUAA--GAGGGUGAGUCCACUUCG------- ------------.((((((((.(((..(((((....)))))..))).((((((.((((((((.-...)))))))).....))))))))--))))))............------- ( -24.90, z-score = -1.06, R) >droAna3.scaffold_13337 22113126 91 + 23293914 ------------UGCUUUUUUCGUGGCUGUCAGAACUGACAAACGCAAAUGAUUUAUGUGUGU-UUGCAUGCGUGUAAAUGUCAUUAA--GAGGGUGAG-CCGCUUC-------- ------------.((((((((((((..(((((....)))))..))).((((((.((((((((.-...)))))))).....))))))..--))))).)))-)......-------- ( -26.40, z-score = -1.49, R) >dp4.chrXR_group8 27292 111 + 9212921 UUCCUCUCUGUUCUUUUUUUUCGUGGCUGUCAGAACUGACAAACGCAAAUGAUUUAUGUGUGUGCCGCAUGCGUGUAAAUGUCAUUAAA-GAGGGUGGGUGAGUCGUCUCCG--- ...(((((..((((((((....(((..(((((....)))))..))).((((((.((((((((.....)))))))).....)))))))))-)))))..)).))).........--- ( -32.10, z-score = -2.11, R) >droPer1.super_80 40948 106 - 286535 -----UUCCUCUCUUUUUUUUCGUGGCUGUCAGAACUGACAAACGCAAAUGAUUUAUGUGUGUGCCGCAUGCGUGUAAAUGUCAUUAAA-GAGGGUGGGUGAGUCGUCUCCG--- -----.(((.((((((((....(((..(((((....)))))..))).((((((.((((((((.....)))))))).....)))))))))-))))).))).(((....)))..--- ( -32.00, z-score = -2.28, R) >droWil1.scaffold_180698 3947297 86 - 11422946 ----------GUUUUUUUUUUCGUGGCUGUCAGAACUGACAAACGCAAAUGAUUUAUGUGUGU-UUGCAUGCGUGUAAAUGUCAUUAA--GAGGGUGAG---------------- ----------.......((((((((..(((((....)))))..))).((((((.((((((((.-...)))))))).....))))))..--)))))....---------------- ( -22.40, z-score = -1.49, R) >droVir3.scaffold_13049 7831749 89 - 25233164 -------UUUUUUUCUUUUGUGGCUGCUGUCAGAACUGACAAACGCAAAUGAUUUAUGUGUGU-UUGCAUGCGUGUAAAUGUCAUUAGGUAGCCGCG------------------ -------............(((((((((((((....)))).......((((((.((((((((.-...)))))))).....)))))).))))))))).------------------ ( -30.40, z-score = -3.49, R) >droMoj3.scaffold_6680 2315665 107 - 24764193 -------UUUUUUUUUUUUGUGGCUGCUGUCAGAACUGACAAACGCAAAUGAUUAAUGUGUGU-UUGCAUGCGUGUAAAUGUCACUAGGUGCGGGUGCCUGAGCGGCAGUUGGAG -------...........(.(((((((((((((.......(((((((.((.....)).)))))-))((((.((..(............)..)).)))))))).))))))))).). ( -30.70, z-score = -0.46, R) >droGri2.scaffold_15110 14771330 90 + 24565398 --------------UUGUUGUUGCUGCUGUCAGAACUGACAAACGCAAAUGAUUUAUGUGUGU-UUGCAUGCGUGUAAAUGUCAUUAGGAGGUGGAGCAGCAGCA---------- --------------....((((((((((((((....))))...(((.((((((.((((((((.-...)))))))).....)))))).....))).))))))))))---------- ( -32.20, z-score = -2.47, R) >consensus ____________UGCUUUUUUCGUGGCUGUCAGAACUGACAAACGCAAAUGAUUUAUGUGUGU_UUGCAUGCGUGUAAAUGUCAUUAA__GAGGGUGAGUCAGC___________ ......................((...(((((....)))))...)).((((((.((((((((.....)))))))).....))))))............................. (-15.71 = -15.94 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:33 2011