| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,361,308 – 22,361,383 |
| Length | 75 |
| Max. P | 0.964909 |
| Location | 22,361,308 – 22,361,383 |
|---|---|
| Length | 75 |
| Sequences | 8 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 74.01 |
| Shannon entropy | 0.55846 |
| G+C content | 0.33841 |
| Mean single sequence MFE | -12.98 |
| Consensus MFE | -5.52 |
| Energy contribution | -5.40 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.62 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964909 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22361308 75 + 24543557 CCAUUUUUUACGACACUUGGCUGCUCAAACUAAUAUCAUUUUUAUGUCUCUGCUGCUUCAAAGUGUCAAUAAAAG ...........((((((((((.((....(((((........))).))....)).)))...)))))))........ ( -14.10, z-score = -2.66, R) >droSim1.chr3L 21686356 75 + 22553184 CCAUUUUUUACGACACUUGGCUGCUCAAACUAAUAUAAUUUUUAUGUCUCUGCUGCUUCAAAGUGUCAAUAAAAG ...........((((((((((.((....(((((........))).))....)).)))...)))))))........ ( -14.10, z-score = -2.66, R) >droSec1.super_11 2297580 75 + 2888827 CCAUUUUUUAUGACACUUGGCUGCUCAAACUAAUAUAAUUUUUAUGUCUCUGCUGCUUCAAAGUGUCAAUAAAAG .....((((((((((((((((.((....(((((........))).))....)).)))...))))))).)))))). ( -16.00, z-score = -3.26, R) >droYak2.chr3L 22785203 75 + 24197627 CCAUUUUUUACGACACUUGGCUGCUCAAACUAAUAUAAUUUUUAUGUCUCUGCUGCUUCAAAGUGUCAAUAAAAA ...........((((((((((.((....(((((........))).))....)).)))...)))))))........ ( -14.10, z-score = -2.86, R) >droEre2.scaffold_4784 22031559 75 + 25762168 CCAUUUUUUACGACACUUGGCUGCUCAAACUAAUAUAAUUUUUAUGUCUCUGCUGCUUCAAAGUGUCAAUAAAAG ...........((((((((((.((....(((((........))).))....)).)))...)))))))........ ( -14.10, z-score = -2.66, R) >droAna3.scaffold_13337 22098983 73 + 23293914 UAGCGUUUUACGAUUCCUG-CUGCGCAAACUAAUAUCAUUUUUAUGUCACU-CUGUUACAAAGUGUCAAUAAAAG ..((((.............-..)))).............(((((((.((((-.((...)).)))).).)))))). ( -9.76, z-score = -0.37, R) >droWil1.scaffold_180698 3928143 71 - 11422946 CCACCCCCUUCACCGCCUAGUCAGAGAAACUAAUAUAAUUUUUAUGUCUUUGUCAAUAAAAAGAAGAAAAG---- .......((((........(.((((((...(((........)))..)))))).)........)))).....---- ( -8.09, z-score = -1.88, R) >droGri2.scaffold_15110 14750796 64 + 24565398 -------UUAUGGUGCUUUGGUGUUGGAACAACUAUUAUUUUUAUGGUGUG--CACUGUAAGGUGUCAAUGAA-- -------...(((..(((((((((....(((.((((.......))))))))--))))..))))..))).....-- ( -13.60, z-score = -1.06, R) >consensus CCAUUUUUUACGACACUUGGCUGCUCAAACUAAUAUAAUUUUUAUGUCUCUGCUGCUUCAAAGUGUCAAUAAAAG ...........(((((((....((........((((.......)))).......))....)))))))........ ( -5.52 = -5.40 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:30 2011