| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,360,530 – 22,360,600 |
| Length | 70 |
| Max. P | 0.818457 |
| Location | 22,360,530 – 22,360,600 |
|---|---|
| Length | 70 |
| Sequences | 4 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 91.19 |
| Shannon entropy | 0.14272 |
| G+C content | 0.50357 |
| Mean single sequence MFE | -17.38 |
| Consensus MFE | -16.65 |
| Energy contribution | -15.90 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.818457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22360530 70 - 24543557 CCAAAGUUCUGCGUAAUCUACAUCAGCGCGGAACAGAGGAGGCGAUAUGAGAGUACCCCAAGAAUAUGAC .....(((((((((...........)))))))))...((.((...(((....)))))))........... ( -17.80, z-score = -2.20, R) >droSim1.chr3L 21685541 70 - 22553184 CCAAAGUUCUGCGUAAUCUACAUCAGCGCGGAGCAGAGGAGGCGAUAUGAGAGCAGCCCGAGAAUAUGAC .....(((((((((...........))))))))).(.((..((.........))..)))........... ( -17.70, z-score = -0.96, R) >droSec1.super_11 2296765 70 - 2888827 CCAAAGUUCUGCGUAAUCUACAUCAGCGCGGAGCAGAGGAGGCGAUAUGAGAGCAACCCGAGAAUAUGAC .....(((((((((...........))))))))).(.((..((.........))..)))........... ( -17.00, z-score = -1.13, R) >droYak2.chr3L 22784443 70 - 24197627 CCAAAGUUCUGCGCAAUCUACAUCUGUGCAAAACAGAGGAGGCGAUAUGAGGGCAGCCCAAGAAUUUGAC ...(((((((.(((..(((...(((((.....)))))))).)))......(((...))).)))))))... ( -17.00, z-score = -0.74, R) >consensus CCAAAGUUCUGCGUAAUCUACAUCAGCGCGGAACAGAGGAGGCGAUAUGAGAGCAGCCCAAGAAUAUGAC .....(((((((((...........))))))))).(.((..((.........))..)))........... (-16.65 = -15.90 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:30 2011