| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,350,251 – 22,350,333 |
| Length | 82 |
| Max. P | 0.513709 |
| Location | 22,350,251 – 22,350,333 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 72.98 |
| Shannon entropy | 0.52557 |
| G+C content | 0.43260 |
| Mean single sequence MFE | -17.25 |
| Consensus MFE | -9.63 |
| Energy contribution | -9.53 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513709 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22350251 82 + 24543557 UUUCUCUUGCCAA-GAUGCUUUUCCAUUUCGCCCGCUUCAAGGACCCCCUUGAGG-ACAUUGCUUUAAGAAUGGGAACGACAAU .............-..(((.(((((((((.((...((((((((....))))))))-.....)).....))))))))).).)).. ( -19.50, z-score = -1.07, R) >droEre2.scaffold_4784 22020277 82 + 25762168 UUUCUUCUGCCAA-GAUGCUUUUCCAUUUCGCUCGCUUCAAGGACCCCCUUGAGG-ACGCUGCUUUAAGAAUGGGAACGACAAU .....(((....)-))(((.(((((((((.((.((((((((((....))))))))-.))..)).....))))))))).).)).. ( -22.80, z-score = -1.75, R) >droYak2.chr3L 22762693 82 + 24197627 UUUCUUCUGCCAA-GAUUCUUUUUCAUUUAUUCCACUUCAAGGACCCCCUUGAAA-ACAUUGCUUUAAGAAUGGGAAUGACGAU .....(((....)-))...........(((((((..(((((((....))))))).-.((((........))))))))))).... ( -16.90, z-score = -1.57, R) >droSec1.super_11 2286322 84 + 2888827 UUUCUUCUGCCAAAGAUACUUUUCCAUUUCGCCCGCUUCAAGGACCCCCUUGAGGGACAUUCCUUUAAGAAUGGGAACGACAAU .....(((.....))).....((((..........((((((((....))))))))..(((((......)))))))))....... ( -19.30, z-score = -0.94, R) >droSim1.chr3L_random 984671 82 + 1049610 UUUCUUCUGCCAA-GAUACUUUUCCAUUUCGCCCGCUUCAAGGACCCCCUUGAGG-ACAUUGCUUUAAGAAUGGGAACGACAAU .....(((....)-))..(.(((((((((.((...((((((((....))))))))-.....)).....))))))))).)..... ( -19.40, z-score = -1.63, R) >droVir3.scaffold_13049 7798392 62 - 25233164 ------------------AAGCUGUGUGGCGAGGGUUUCAAAAACACAUAUAAGG-GCAUUCC---AAGAGUAAAAACUAAUCU ------------------..((((((((................))))).....)-)).....---.................. ( -5.59, z-score = 1.54, R) >consensus UUUCUUCUGCCAA_GAUACUUUUCCAUUUCGCCCGCUUCAAGGACCCCCUUGAGG_ACAUUGCUUUAAGAAUGGGAACGACAAU ..................(.(((((((((......((((((((....)))))))).............))))))))).)..... ( -9.63 = -9.53 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:29 2011