| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,328,804 – 22,328,910 |
| Length | 106 |
| Max. P | 0.601929 |
| Location | 22,328,804 – 22,328,910 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 80.70 |
| Shannon entropy | 0.31666 |
| G+C content | 0.42368 |
| Mean single sequence MFE | -29.02 |
| Consensus MFE | -19.38 |
| Energy contribution | -20.94 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.601929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22328804 106 - 24543557 UAAUUAAAAUAAUGCUACCCGGCUGCACAAAACAAAAAUGCCAAGCAAAUGGCUUAGAAUAGCUGGCUAGGGUAGCUUGGGUAU---CUACUAGCUACCCACACAUACA-- .............((((((((((................))).(((....((((......)))).))).))))))).((((((.---(.....).))))))........-- ( -31.29, z-score = -2.20, R) >droEre2.scaffold_4784 21999304 80 - 25762168 UAAUUAAAAUAAUGUUACCCGGCUGCACAGAACAAAAAUGCCAAGCCAAUGGCUUAGAAUAGCUG----GGGUAG-AGGGGUACA-------------------------- ............(((.((((..((((.(((.........((((......)))).........)))----..))))-..)))))))-------------------------- ( -22.37, z-score = -1.64, R) >droSec1.super_11 2264845 111 - 2888827 UAAUUAAAAUAAUGUUACCCGGCUGCACAAAACAAAAAUGCCAAGCAAAUGGCUUAGAAUAGCUGGUUAGGGUAGCUUGGGUACUAGCUCCUAGCUACCCACACACUCACA ..................(((((((..............((((......))))......)))))))...((((((((.((((....)).)).))))))))........... ( -30.35, z-score = -1.32, R) >droSim1.chr3L 21663164 109 - 22553184 UAAUUAAAAUAAUGUUACCCGGCUGCACAAAACAAAAAUGCCAAGCAAAUGGCUUAGAAUAGCUGGCUAGGGUAGCUUGGGUACUAGCUGCUAGCUACCCACACACACA-- .............((((((((((................))).(((....((((......)))).))).))))))).((((((((((...)))).))))))........-- ( -32.09, z-score = -1.38, R) >consensus UAAUUAAAAUAAUGUUACCCGGCUGCACAAAACAAAAAUGCCAAGCAAAUGGCUUAGAAUAGCUGGCUAGGGUAGCUUGGGUACU__CU_CUAGCUACCCACACACACA__ .............((((((((((................)))........((((......)))).....))))))).((((((............)))))).......... (-19.38 = -20.94 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:25 2011