| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,326,107 – 22,326,215 |
| Length | 108 |
| Max. P | 0.895286 |
| Location | 22,326,107 – 22,326,215 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 83.77 |
| Shannon entropy | 0.28693 |
| G+C content | 0.53206 |
| Mean single sequence MFE | -37.66 |
| Consensus MFE | -23.34 |
| Energy contribution | -24.78 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.895286 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 22326107 108 - 24543557 UAGGUUUUGUG---CCUAAUUGUAUGCAGCGCAUGCAGGCGGUCA---AUGCAUU-GCAAUGGCA--AAAUCAGAGGCACAGAACUCUCCAGAAGACGGAAACGGGGACAAGGACAC ..(((((((((---(((..((((((((...))))))))...((((---.(((...-))).)))).--.......)))))))))))).(((.......(....)(....)..)))... ( -38.50, z-score = -3.75, R) >droEre2.scaffold_4784 21996562 116 - 25762168 UAGCUUUUUUGGCGCCUAGUUGCAUGCAACGCAUGCAGACGGGCAGGCGGGCAGUAGCAAAAGCAGCAGAACAGAGGAACAGGACUCUGCAGAAGACGCAAACGGAGAGAA-GACAC ..(((((((((((((((..((((((((...))))))))..))))..((..((....))....)).))....(((((........)))))))))))).))............-..... ( -38.10, z-score = -3.02, R) >droYak2.chr3L 22726660 110 - 24197627 UAGCUUUUGUGGCGCCUAAUUGUACGCAACGCAUGCAGGCGGGCA---UUGCAAU-GCAUUGGCA--AAAGCAGAGGCACAGAACUCUCCAGAA-AUGGGAAAGGGGAAAAGGACAC ....(((((((.(((((..(((((.((...)).)))))..)))).---((((..(-((....)))--...)))).).)))))))(((((((...-.)))...))))........... ( -32.50, z-score = -1.21, R) >droSec1.super_11 2262037 111 - 2888827 UAGCUUUUGUGCCGCCUAAUUGUAUGCAGUGCAUGCAGGCGGGCA---ACGCAUU-GCAAUGGCA--AAAGCAGCGGCACAGAACUCUCCAGAAGACGGAAACGGGGACAAGGACAC .((.(((((((((((....((((.((((((((.(((......)))---..)))))-)))...)))--).....))))))))))))).(((.......(....)(....)..)))... ( -41.20, z-score = -2.77, R) >droSim1.chr3L 21658986 111 - 22553184 UAGCUUUUGCGCCGCCUAAUUGUAUGCAGCGCAUGCAGGCGGGCA---ACGCAUU-GCAAUGGCA--AAAGCAGCGGCACAGAACUCUCCAGAAGACGGAAACGGGGACCAGGACAC ..((((((((.((((((....((((((...))))))))))))(((---(....))-))....)))--)))))...((..(.....(((.....)))((....)).)..))....... ( -38.00, z-score = -1.40, R) >consensus UAGCUUUUGUGCCGCCUAAUUGUAUGCAGCGCAUGCAGGCGGGCA___ACGCAUU_GCAAUGGCA__AAAGCAGAGGCACAGAACUCUCCAGAAGACGGAAACGGGGACAAGGACAC ..((((((((...((((..((((((((...))))))))..))))............((....))......)))))))).......(((((.............)))))......... (-23.34 = -24.78 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:24 2011