| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,325,918 – 22,326,024 |
| Length | 106 |
| Max. P | 0.870219 |
| Location | 22,325,918 – 22,326,024 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.34 |
| Shannon entropy | 0.33776 |
| G+C content | 0.50751 |
| Mean single sequence MFE | -36.18 |
| Consensus MFE | -22.19 |
| Energy contribution | -24.50 |
| Covariance contribution | 2.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.870219 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22325918 106 - 24543557 -GGCCAAGCUAACUGACAUGGACAAAUGAACAAAUGGAGGGGCGGACUAACGGGCAGGCCAAUUGCCUUGCCUAGUUACGUCAGUUAGUUGGUCAGUUAGUUUGUCA -(((.((((((((((((...(((...((..(........)..))(((((((((((((((.....))).))))).)))).))).))).....))))))))))))))). ( -39.70, z-score = -3.02, R) >droSim1.chr3L 21658797 106 - 22553184 -GGCCAAGCUAACUGACAUGGACAAAUGGACAAAUGGAGGGACGGACCAACGGGCAGGCCAAUUGCCUUGCCUAGUUACGUCAGUUAGUUGGUCAGUUAGUUUGUCA -(((.((((((((((((...(((.(((.(((.......((......))(((((((((((.....))).))))).)))..))).))).))).))))))))))))))). ( -41.10, z-score = -3.28, R) >droSec1.super_11 2261860 94 - 2888827 -GGCCAAGCUAACUGACAUGGACAAAUGGACAAAUGGAGGGACGGACCAACGGGCAGCCCAAUUGCCUUGCCUAGUUACGUCAGUUAGUUUGUCA------------ -(((.((((((((((((...(((....((.(((.((..((......))..))(((((.....))))))))))..)))..))))))))))))))).------------ ( -32.00, z-score = -1.89, R) >droAna3.scaffold_13337 22065018 104 - 23293914 GGAGCCUGCAAAGUGAC--GGACAGACGCACAGAAGGCGAGAAGGGCAAACAGACUG-CCAAUUGCUUUGCCUGGUUACGUCAGUUACCCGGUCAGUUAGUUUGUCA ...((((.....(((.(--(......)))))...))))......(((((((.(((((-...........(((.(((.((....)).))).)))))))).))))))). ( -31.90, z-score = -0.40, R) >consensus _GGCCAAGCUAACUGACAUGGACAAAUGGACAAAUGGAGGGACGGACCAACGGGCAGGCCAAUUGCCUUGCCUAGUUACGUCAGUUAGUUGGUCAGUUAGUUUGUCA .(((((.((((((((((...(((............(..((......))..)(((((((.(....).))))))).)))..)))))))))))))))............. (-22.19 = -24.50 + 2.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:23 2011