| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,325,291 – 22,325,393 |
| Length | 102 |
| Max. P | 0.964879 |
| Location | 22,325,291 – 22,325,393 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 80.24 |
| Shannon entropy | 0.37775 |
| G+C content | 0.46572 |
| Mean single sequence MFE | -32.12 |
| Consensus MFE | -22.60 |
| Energy contribution | -23.55 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.74 |
| SVM RNA-class probability | 0.964879 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22325291 102 - 24543557 -GGCCUAUAAGUUCACCUUGGGCUGAUCAGAGGAAACUCGAAUCUUUCGGCCCGUUCUGAAUUACAGCACAUCGGUUGAUGUUCAGUCGAAUGUGAAUG---CGAA -.((.....((((((...((((((((...(((....))).......))))))))...))))))....(((((((..((.....))..)).)))))...)---)... ( -35.20, z-score = -2.76, R) >droAna3.scaffold_13337 22064420 99 - 23293914 ------GGCAGCUCACCUCGGCCUGAUCAAAACAAUAUCAAAACCCUCGGCUCGGUUUCAACUUCGA-ACUUUGUUUGAUGUUCAGUCGACUGUGAGUGGCUCGGA ------(((.((((((.(((((.(((........((((((((......((.((((........))))-.))...))))))))))))))))..)))))).))).... ( -26.60, z-score = -0.73, R) >droEre2.scaffold_4784 21995739 102 - 25762168 GUAGCUAUAAGUUCACAUUGGGGUGAUCAGAGGAAACUCGAGUC-CUCGGCCCGUUCUGAGUUACAGCACUUCGAUUGAUGUUCAGUGAAAUGUGAAUG---CGAA ...((.....(((((((((((((((....(((....)))..((.-(((((......)))))..))..)))))).((((.....))))..))))))))))---)... ( -28.20, z-score = -0.61, R) >droYak2.chr3L 22725845 103 - 24197627 GGAACUUUAUGUUCACCUUGGGCUGAUCAGAGGAAACUCGAAUCUUUCCCCCCGGUCUGAAUUACAGCACUUCGAUUGAUGUUCACUCAAAGGUGGAUG---CGAA ......((..((((((((((((..(((..(((....)))..)))...)))...((((((.....))).)))..((.((.....)).)).))))))))).---.)). ( -27.70, z-score = -0.58, R) >droSec1.super_11 2261235 102 - 2888827 -GGCCUAUAAGUUCACCUUGGGCUGAUCAGAGGAAACUCGAAUCUAUCGGCCCGUUCUGAAUUACAGCACUUCGAUUGAUGUUCAGUCGAAUGUGAAUG---UGAA -..........((((...(((((((((..(((....)))......)))))))))...))))(((((.(((((((((((.....)))))))).)))..))---))). ( -37.80, z-score = -3.99, R) >droSim1.chr3L 21658172 102 - 22553184 -GGCCUAUAAGUUCACCUUGGGCUGAUCAGAGGAAACUCGAAUCUUUCGGCCCGUUCUGAAUUACAGCACUUCGAUUGAUGUUCAGUCGAAUGUGAAUG---UGAA -..........((((...((((((((...(((....))).......))))))))...))))(((((.(((((((((((.....)))))))).)))..))---))). ( -37.20, z-score = -3.74, R) >consensus _GGCCUAUAAGUUCACCUUGGGCUGAUCAGAGGAAACUCGAAUCUUUCGGCCCGUUCUGAAUUACAGCACUUCGAUUGAUGUUCAGUCGAAUGUGAAUG___CGAA ..........((((((..((((((((...(((....))).......)))))))).................(((((((.....)))))))..))))))........ (-22.60 = -23.55 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:22 2011