Locus 8370

Sequence ID	dm3.chr3L
Location	22,319,949 – 22,320,039
Length	90
Max. P	0.846105

overview

Window 7

Location	22,319,949 – 22,320,039
Length	90
Sequences	4
Columns	90
Reading direction	reverse
Mean pairwise identity	91.18
Shannon entropy	0.13521
G+C content	0.45783
Mean single sequence MFE	-20.32
Consensus MFE	-12.45
Energy contribution	-12.96
Covariance contribution	0.50
Combinations/Pair	1.00
Mean z-score	-3.05
Structure conservation index	0.61
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.89
SVM RNA-class probability	0.846105
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 22319949 90 - 24543557
UAACGCGCUUUUUAAACCAAACAAAAGCAAAUUGCAAUGCCAGCACACACACACAUAGACAGCUCGGCAUUGCAAUGCCUUACUGACACG
....((((((((..........))))))..((((((((((((((.................))).)))))))))))))............ ( -24.53, z-score =  -4.59, R)
>droSim1.chr3L 21652711 80 - 22553184
UAACGCGCUUUUUAAACCAAACAAAAGCAAAUUGCAAUGCCAGCACACACACACAUAGGCAGCUCGGCAUUG----------CUGACACG
......((((((..........)))))).....(((((((((((.................))).)))))))----------)....... ( -19.53, z-score =  -2.39, R)
>droSec1.super_11 2255805 80 - 2888827
UAACGCGCUUUUUAAACCAAACAAAAGCAAAUUGCAAUGCCAGCACACACACACAUAGACAGCUCGGCAUUG----------CUGACACG
......((((((..........)))))).....(((((((((((.................))).)))))))----------)....... ( -19.53, z-score =  -3.34, R)
>droEre2.scaffold_4784 21990342 78 - 25762168
UAACGCGCUUUUUAAACCAAACAAAAGCAAAUUGCAAUGCCAG--CACGCACACAUAGACAGCCCGGCAUUG----------CUGACACG
......((((((..........)))))).....((((((((.(--(...(.......)...))..)))))))----------)....... ( -17.70, z-score =  -1.88, R)
>consensus
UAACGCGCUUUUUAAACCAAACAAAAGCAAAUUGCAAUGCCAGCACACACACACAUAGACAGCUCGGCAUUG__________CUGACACG
......((((((..........))))))......((((((((((.................))).))))))).................. (-12.45 = -12.96 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:21 2011