| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,318,833 – 22,318,915 |
| Length | 82 |
| Max. P | 0.992595 |
| Location | 22,318,833 – 22,318,915 |
|---|---|
| Length | 82 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 55.05 |
| Shannon entropy | 0.78140 |
| G+C content | 0.61249 |
| Mean single sequence MFE | -33.46 |
| Consensus MFE | -13.34 |
| Energy contribution | -13.22 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.55 |
| SVM RNA-class probability | 0.992595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22318833 82 + 24543557 -------GCCCGGAGUGGCG---ACUGGAGCAGCCUGCCUGCCUG----AAGGUGGGCCCGAAUGAAUUCCCUGCCCGAGUCAGCCGGUUGCCGGU -------..((((..(((((---(((((.((((...(((..((..----..))..)))..(((....))).)))))).)))).))))....)))). ( -35.90, z-score = -1.45, R) >droSec1.super_11 2254675 89 + 2888827 -------GCCCGGAGUGGUGGUGACUGGAGCAGCCUGCCUGCCUGCCUGAAGGUGGGCCCGAAUGAAUCCCCUGCCCGAGUCACCCGCUUGCCGGU -------..((((...((((((((((((.((((...(((..(((......)))..)))..((.....))..)))))).))))).)))))..)))). ( -41.50, z-score = -2.98, R) >droYak2.chr3L 22719667 81 + 24197627 -------GCCCGGAGUGGCG---ACUGGAGCAGCCUGCCUGCCUA----AGGGUGGGCUCAAAUGAAACCCAUGCUAGAGUCACCCGGUUGC-GUU -------((((((.(((((.---.((((.(.((((..(((.....----.)))..)))))..(((.....))).)))).)))))))))..))-... ( -33.90, z-score = -1.54, R) >droEre2.scaffold_4784 21989227 67 + 25762168 -------GCCCGGAGUGGCGUCGUCUGGAGG---CUGCCUGCCUG----AAGGUGGGCUCAAAUGAAACCUCUGUUGAUAU--------------- -------(((......)))((((...(((((---..(((..((..----..))..)))((....))..)))))..))))..--------------- ( -23.40, z-score = -1.24, R) >droAna3.scaffold_13337 22058041 95 + 23293914 GUUUGGAGAUUGGAGUGGCAACCGCCACUCUAG-CCGGAGGCAAGAGCGGGUUCGGUCUCGGCCAUAAUAAAAAAUGCAGUUUCAUAAAUGCUGAA (((((((((((((((((((....)))))))..(-(((.((((..(((....))).))))))))..............))))))).)))))...... ( -32.60, z-score = -2.06, R) >consensus _______GCCCGGAGUGGCG___ACUGGAGCAGCCUGCCUGCCUG____AAGGUGGGCUCGAAUGAAACCCCUGCUCGAGUCACCCGGUUGC_GGU .......((((((...........)))).)).....((((((((......))))))))...................................... (-13.34 = -13.22 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:20 2011