| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,315,272 – 22,315,378 |
| Length | 106 |
| Max. P | 0.805505 |
| Location | 22,315,272 – 22,315,378 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 82.73 |
| Shannon entropy | 0.29350 |
| G+C content | 0.50345 |
| Mean single sequence MFE | -16.24 |
| Consensus MFE | -9.46 |
| Energy contribution | -10.10 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805505 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22315272 106 - 24543557 AAAAAUAAAACUCCAUUAAGAACCGCCCCGGCCCUGCAUCCGCCCCAACCACUAACGACCCACAGCCCACUAACCUUUGCUGACCUUUGCCAAUUGAUGGAGCAGA ..........(((((((((.....((....))...(((.............(....).....((((............)))).....)))...))))))))).... ( -17.60, z-score = -2.08, R) >droSim1.chr3L 21647948 106 - 22553184 AAAAAUAAAACUCCAUUAAGAACCGGCCCGCCCCUGCUGCCGCCCCAACCACUGACCACCAACAACCCACUAACCUUUGCUGACCUUUGCCAAUUGAUGGAGCAGA ..........(((((((((....((((..((....)).))))....................................((........))...))))))))).... ( -17.90, z-score = -2.41, R) >droSec1.super_11 2250988 106 - 2888827 AAAAAUAAAACUCCAUUAAGAACCGGCCCGCCCCUGCUGCCGCCCCAACCACUGACCACCAACAGCCCACUAACCUUUGCUGACCUUUGCCAAUUGAUGGAGCAGA ..........(((((((((....((((..((....)).))))....................((((............))))...........))))))))).... ( -20.60, z-score = -2.68, R) >droYak2.chr3L 22716195 82 - 24197627 AAAAAUAAAACUCCAUUAAGAACCGCCCC------------------------AACCUCCAACACCCCACUAACCUUUGCUGACCUUUGCCAAUUGAUGGAGCAGA ..........((((((((((........)------------------------.........................((........))...))))))))).... ( -9.50, z-score = -1.62, R) >droEre2.scaffold_4784 21985745 88 - 25762168 AAAAAUAAAACUCCAUUAAGGACCGCCCC-----------CGUCCC-------AACCCCCAACACCCCACUAACCUUUGCUGACCUUUGCCAAUUGAUGGAGCAGA ..........(((((((((((((......-----------.)))).-------.........................((........))...))))))))).... ( -15.60, z-score = -2.96, R) >consensus AAAAAUAAAACUCCAUUAAGAACCGCCCCG_CCCUGC__CCGCCCCAACCACUAACCACCAACACCCCACUAACCUUUGCUGACCUUUGCCAAUUGAUGGAGCAGA ..........(((((((((.....((....))..............................................((........))...))))))))).... ( -9.46 = -10.10 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:20 2011