| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,309,406 – 22,309,458 |
| Length | 52 |
| Max. P | 0.809477 |
| Location | 22,309,406 – 22,309,458 |
|---|---|
| Length | 52 |
| Sequences | 8 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 68.68 |
| Shannon entropy | 0.63474 |
| G+C content | 0.52008 |
| Mean single sequence MFE | -11.12 |
| Consensus MFE | -6.66 |
| Energy contribution | -6.33 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.86 |
| Mean z-score | -0.59 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809477 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22309406 52 + 24543557 CUCUAACCCCAAAACCCCUUAAACUGUGGUCAG---UAAAGUUGAUGGCCGCUGG .......................(.(((((((.---.........))))))).). ( -9.30, z-score = -0.33, R) >droSim1.chr3L 21639756 55 + 22553184 CUCUAACCCCAAAACCCCUUAAAUUGUGGUCAGCUGUAAAGUUGAUGGCCGCUGG .........................((((((((((....)))...)))))))... ( -10.70, z-score = -0.63, R) >droSec1.super_11 2245054 55 + 2888827 CUCUAACCACAAAACCCCUUAAAUUGUGGUCAGCUGUAAAGUUGAUGGCCGCUGG .....(((((((...........)))))))((((.((..........)).)))). ( -11.60, z-score = -0.82, R) >droYak2.chr3L 22710480 55 + 24197627 CUCUAACCCCAAAACCCCUUAAAUUGUGGUCAGCUGUAAAGUUGAUGGCCGCUGG .........................((((((((((....)))...)))))))... ( -10.70, z-score = -0.63, R) >droEre2.scaffold_4784 21980205 55 + 25762168 CUCUAACCCAAAAACCCCUUAAAUUGUGGUCAGUUGUAAAGUUGAUGGCCGCUGG .........................(((((((.............)))))))... ( -8.82, z-score = -0.03, R) >droAna3.scaffold_13337 22049031 55 + 23293914 AUCUAACCUGUGAACUCCCUUAAUUGUGGUCAGAAGCAAAGUUGAUGGCUAUUCG .........................(((((((..(((...)))..)))))))... ( -7.30, z-score = 0.41, R) >dp4.chr4_group1 5252198 51 + 5278887 CCCCACGCCCAGCCCCCCACUGCCGCCAGCCAAAAGUCAAGUGGUUGGUGG---- .........(((.......)))((((((((((.........))))))))))---- ( -15.30, z-score = -1.16, R) >droPer1.super_2318 283 51 - 8590 CCCCUGCCACAACCCCCCAACGCCGCCAGCCAAAAGUCAAGUGGUUGGUGG---- ......................((((((((((.........))))))))))---- ( -15.20, z-score = -1.55, R) >consensus CUCUAACCCCAAAACCCCUUAAAUUGUGGUCAGAUGUAAAGUUGAUGGCCGCUGG .........................(((((((.............)))))))... ( -6.66 = -6.33 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:19 2011