| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,295,790 – 22,295,880 |
| Length | 90 |
| Max. P | 0.851983 |
| Location | 22,295,790 – 22,295,880 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 58.71 |
| Shannon entropy | 0.87248 |
| G+C content | 0.42491 |
| Mean single sequence MFE | -21.99 |
| Consensus MFE | -8.02 |
| Energy contribution | -8.01 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.75 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851983 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22295790 90 - 24543557 GUAGCCAGUUUGCCCUGGACAGUUUUUAGUU---------------ACCAUUCGAAAUCG-AGGCCGCUGUGGCUGUGUAUAUUUUCCAAAAUUGGCGGACGAGCU ..(((..(((((((.((((.(((...(((((---------------((..((((....))-))......))))))).....))).)))).....)))))))..))) ( -24.50, z-score = -0.61, R) >droGri2.scaffold_15110 14673218 102 - 24565398 GUAGCCAAUUUGCUGCUCAUCGUUUUUAGUUUA-AUUGGAGAAACAAAAAAUUGUCGGCA-AAGUU-AAA-GACUGUGUAUAGUUUCCAGAAUUGGCAACGGGCCC ((.((((((((..((((.((.((((((.((((.-.......)))).)))))).)).))))-.....-..(-(((((....))))))...)))))))).))...... ( -22.40, z-score = -0.46, R) >droMoj3.scaffold_6680 2213936 91 + 24764193 GUAGCCAAUUUAACGCCCGCCGUUUUUAGUUUA-AUU-------CGACAAAUUGUUGGGA-AAGUU-CAA-----GUGUAUAGUUUCCAGAAUUGGCAAGAGGCCC ...((((((((((((.....)))).........-...-------((((.....))))(((-((.(.-...-----......).))))).))))))))......... ( -17.20, z-score = -0.19, R) >droVir3.scaffold_13049 7728040 97 + 25233164 GUAGCCAAUUUGCUGCCCAUCGUUUUUAGUUUA-AUCG-----AAAACAAAUUGUUGGCA-AAGUU-AAA-GACUGUGUAUAGUUUCCAGAAUUGGCAAGGGGCCC ...((((((((((((..(((.(((((((((((.-....-----.))))...(((....))-)...)-)))-))).)))..)))).....))))))))......... ( -21.60, z-score = -0.45, R) >droPer1.super_322 15170 100 - 26779 GUAGCCAGUUUG----UCCUGGUUUUUUGCUCAGAGUUUUUUAGUUUACAACCGAAAUCG-AAGUCGCAA-GGCUGUGUAUAGUUUCCGCAAUUGGCAUUCAAAUC ...(((((((.(----(...((((.(..(((.(((...))).)))..).))))(((((((-.((((....-)))).))....))))).)))))))))......... ( -21.60, z-score = -1.04, R) >dp4.chr4_group1 5234623 100 - 5278887 GUAGCCAGUUUG----UCCUGGUUUUUUGCUCAGAGUUUUUUAGUUUACAACCGAAAUCG-AAGUCGCAA-GGCUGUGUAUAGUUUCCGCAAUUGGCAUUCAAAUC ...(((((((.(----(...((((.(..(((.(((...))).)))..).))))(((((((-.((((....-)))).))....))))).)))))))))......... ( -21.60, z-score = -1.04, R) >droAna3.scaffold_13337 22034872 88 - 23293914 GUAGCCAGUU-----------GUUUAU-GCUGAAACU-----AAUUAUAAAUCGAAAUCA-AGGCCUCAACGGCCAUACAUACCUUCCUCGAUUGGCAUACAAACU ((((((((((-----------((((((-(.(......-----.).)))))).........-.((((.....))))..............)))))))).)))..... ( -20.10, z-score = -2.79, R) >droEre2.scaffold_4784 21966900 90 - 25762168 GUAGCCAGUUUGCCCUGGACAGUUUUUAGUU---------------ACCAUUCGAAAUCG-AGGCCGCUGUGGCUGUGUAUAGUUUCCAAAAUUGGCGGACAAGCU ((.((((((((((..((.((((((..((((.---------------.((..(((....))-)))..)))).)))))).))..)).....))))))))..))..... ( -24.30, z-score = -0.51, R) >droYak2.chr3L 22692455 87 - 24197627 GUAGCCAGUUUGCCCUGGACAGU---UAGUU---------------ACCAUUUGGAAUCG-AAGCCGCUGAGGCUGUGUAUAGUUUCCAAAAUUGGCGGACAAGCA ...((..(((((((.(((((...---..)).---------------.)))(((((((.((-.((((.....)))).))......)))))))...)))))))..)). ( -25.00, z-score = -0.93, R) >droSec1.super_11 2231396 90 - 2888827 GUAGCCAGUUUGCCCUGGACAGUUUUUAGUU---------------ACCAUUCGAAAUCA-AGGCCGCUGUGGCUGUGUAAAUUUUCCAAAAUUGGCGGACAAGCU ..(((..(((((((.((((.(((((.(((((---------------((....((......-....))..)))))))...))))).)))).....)))))))..))) ( -22.30, z-score = -0.09, R) >droSim1.chr3L_random 967253 90 - 1049610 GUAGCCAGUUUGCCCUGGACAGUUUUUAGUU---------------ACCAUUCGAAAUCA-AGGCCGCUGUGGCUGUGUAAAUUUUCCAAAAUUGGCGGACAAGCU ..(((..(((((((.((((.(((((.(((((---------------((....((......-....))..)))))))...))))).)))).....)))))))..))) ( -22.30, z-score = -0.09, R) >triCas2.ChLG4 7816589 75 + 13894384 -------------------GAAUCUAUUGUG------------AUUUUUAUUCGAUUCGAUACACCGCUAGUGUGGUGUGUUUUUUCAAUGUUUUUCUCAAUAACA -------------------.....(((((.(------------(....((((.((...((((((((((....))))))))))...))))))....)).)))))... ( -21.00, z-score = -4.34, R) >consensus GUAGCCAGUUUGCCCUGCACAGUUUUUAGUU_______________ACCAAUCGAAAUCA_AAGCCGCAA_GGCUGUGUAUAGUUUCCAAAAUUGGCAGACAAGCC ...(((((((...........................................(....)...((((.....))))...............)))))))......... ( -8.02 = -8.01 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:16 2011