| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,241,008 – 22,241,099 |
| Length | 91 |
| Max. P | 0.869203 |
| Location | 22,241,008 – 22,241,099 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 65.99 |
| Shannon entropy | 0.68498 |
| G+C content | 0.28753 |
| Mean single sequence MFE | -16.55 |
| Consensus MFE | -6.93 |
| Energy contribution | -7.02 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869203 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3L 22241008 91 + 24543557 CAAAAGUGCGCGUAUUCGUACAAAUAUUUUAGUGCAUAGGUAGAUUAUACCCUCUUAAAUUC---CUAUGUAUUUAUUUAUGCAAAUUUAGUUA .....(((((......)))))...........(((((((((((((((((.............---.)))).))))))))))))).......... ( -16.64, z-score = -1.59, R) >droPer1.super_45 463744 88 - 618639 CAUACAGAUA-AUAUACAUAUCUAUAU-UA-GUGUAUGGGUAGAUUAUACCCACUUUAACUC---UGGCGUAUUUAUUUAUGCAAAUUUAGUUA .(((((..((-(((((......)))))-))-.)))))(((((.....)))))....(((((.---..(((((......)))))......))))) ( -19.90, z-score = -2.24, R) >dp4.chrXR_group8 6327830 88 + 9212921 CAUACAGAUA-AUAUACAUAUCUAUAU-UA-GUGUAUGGGUAGAUUAUACCCACUUUAACUC---UGGCGUAUUUAUUUAUGCAAAUUUAGUUA .(((((..((-(((((......)))))-))-.)))))(((((.....)))))....(((((.---..(((((......)))))......))))) ( -19.90, z-score = -2.24, R) >droAna3.scaffold_13337 21407471 85 + 23293914 ----CAUAUAUGCAUACA-GCUUAUAG-UGCAUGUGUGGGUGGAUUAUAACCACUUAAAAUC---UUGCGUAUUUAUUUAUGCAAAUUUAGUUA ----(((((((((((...-.......)-))))))))))(((((.......)))))..((((.---(((((((......)))))))))))..... ( -23.90, z-score = -2.65, R) >droSec1.super_11 2171558 91 + 2888827 CAAAAGUUCGGGUACUCGUACAAAUAUUUUAGUGCAUAGGUAGAUUAUACCCUCUUAAAUUC---CUAUGUAUUUAUUUAUGCAAAUUUAGUUA ..(((((....(((....)))....)))))..(((((((((((((((((.............---.)))).))))))))))))).......... ( -14.04, z-score = -0.55, R) >droSim1.chr3L 21587575 91 + 22553184 CAAAAGUUCGGGUACUCGUACAAAUAUUUCAGUGCAUAGGUAGAUUAUACCCUCUUAAAUUC---CUAUGUAUUUAUUUAUGCAAAUUUAGUUA .................(((.(((((....((((((((((.((.(((........))).)))---)))))))))))))).)))........... ( -14.00, z-score = -0.74, R) >droWil1.scaffold_180698 174246 82 + 11422946 ------------CAUACAUGCAUAUGUGUAUGUGUAUAGGUGGAUCAAAACUAUUAAAAAUCCUUUUACGUAUUUAUUUAUGCAAAUUUAGUUA ------------(((((((......)))))))(((((((((((((....((...(((((....))))).))))))))))))))).......... ( -14.10, z-score = -0.57, R) >droGri2.scaffold_15110 6652863 77 - 24565398 ---------------CAAUGCAGCUCUUUUUGUCCUUCAACUUUCAGCGAAUAAAUGCAUUGC--GUACUUAUUUAUUUAUGCAAAUUUAGUUG ---------------...(((((((....(((.....))).....)))((((((.(((.....--))).)))))).....)))).......... ( -9.90, z-score = 0.26, R) >consensus CA_AAAUACA_GUAUACAUACAUAUAUUUAAGUGCAUAGGUAGAUUAUACCCACUUAAAUUC___UUACGUAUUUAUUUAUGCAAAUUUAGUUA ................................(((((((((((((..........................))))))))))))).......... ( -6.93 = -7.02 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:12 2011