| Sequence ID | dm3.chr2L |
|---|---|
| Location | 6,133,393 – 6,133,486 |
| Length | 93 |
| Max. P | 0.996609 |
| Location | 6,133,393 – 6,133,486 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 94.17 |
| Shannon entropy | 0.09129 |
| G+C content | 0.45994 |
| Mean single sequence MFE | -18.99 |
| Consensus MFE | -18.34 |
| Energy contribution | -18.34 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.06 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.96 |
| SVM RNA-class probability | 0.996609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 6133393 93 + 23011544 GGAGCGAUUAAGAGUUUCGUUACAAAAAACACUCGUCCACUCGUCUUCUUCCUGUUUGUCUCGUCUCGUCUUUCGCUCCUACUAUCUUUCUCG (((((((....(((...((..(((((.......((......))...........)))))..)).))).....))))))).............. ( -20.77, z-score = -3.61, R) >droSim1.chr2L 5920883 90 + 22036055 GGAGCGAUUAAGAGUUUCGUUACAAAAAACACUCGUCCACUC---UUCUUCCUGUUUGUCUCGUCUCGUCCUUCGCUCCUACUAUCUUUCUCG (((((((....(((...((..(((((........(......)---.........)))))..)).))).....))))))).............. ( -19.23, z-score = -3.55, R) >droSec1.super_5 4203606 88 + 5866729 GGAGCGAUUAAGAGUUUCGUUACAAAAAACACUCGUCCACUC---UUCUUCCUGUUUGU--CGUCUCGCCCUUCGCUCCUACUAUCUUUCUCG (((((((....(((...((..(((((........(......)---.........)))))--)).))).....))))))).............. ( -16.73, z-score = -2.51, R) >droEre2.scaffold_4929 15057359 90 + 26641161 GGAGCGAUUAAGAGUUUCGUUACAAAAAACACUCGUCGACUC---UUCAUCCUGUUUGUCUCGUCUCGCCUUUCGCUCCUACCAUCUUUCUCG (((((((....(((...((..(((((........(......)---.........)))))..)).))).....))))))).............. ( -19.23, z-score = -2.58, R) >consensus GGAGCGAUUAAGAGUUUCGUUACAAAAAACACUCGUCCACUC___UUCUUCCUGUUUGUCUCGUCUCGCCCUUCGCUCCUACUAUCUUUCUCG (((((((....(((...((..(((((............................)))))..)).))).....))))))).............. (-18.34 = -18.34 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:20:26 2011