| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,220,735 – 22,220,831 |
| Length | 96 |
| Max. P | 0.648589 |
| Location | 22,220,735 – 22,220,831 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 64.36 |
| Shannon entropy | 0.55774 |
| G+C content | 0.38847 |
| Mean single sequence MFE | -23.08 |
| Consensus MFE | -9.70 |
| Energy contribution | -11.26 |
| Covariance contribution | 1.56 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.648589 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22220735 96 + 24543557 ------AUAUAGGUA-CAUAUAUAUGUACUAUAGUCGGCAUUCCCAACUGCGUAGCAACGGGCGUAAAAUUCAAUUCAUUAC---GCCAUAUUCUGCCCGUUGAGG ------.....((((-(((....)))))))............((((((.(.((((.....(((((((...........))))---))).....))))).)))).)) ( -25.00, z-score = -1.79, R) >droSim1.chr3L 21572507 96 + 22553184 ------AUAUAGGGA-UAAACUAUAGUAUAAACUAUAUAGUUCCCAACUGCGCAGCAGCGGGCGUAAAAUUCAAUUCAUUAC---GCCAUAUUCUGCCCGUUGAGG ------.....((((-.....((((((....))))))....))))(((.(.((((.....(((((((...........))))---))).....))))).))).... ( -26.30, z-score = -2.43, R) >droSec1.super_11 2151222 96 + 2888827 ------AUAUAGGGA-UAAACUAUGGUAUAAACUAUAUAGUUCCCAACUGCGCAGCAGCGGGCGUAAAAUUCAAUUCAUUAC---GCCAUAUUCUGCCCGUUGAGG ------.....((((-.....((((((....))))))....))))(((.(.((((.....(((((((...........))))---))).....))))).))).... ( -26.00, z-score = -1.87, R) >droWil1.scaffold_180698 145191 105 + 11422946 UAAAUAAUAAAAAACCUAUGCAAAUGUUGAAACAAAAUGAUGGCCCAGCGGCAAUCUGUCUGCAAAAAUUUCAAUUCAUUACCAUAGCACAAAAUGUUGUUCAAU- ..(((((((......(((((..((((((((((......(((.(((....))).)))((....))....))))))..))))..))))).......)))))))....- ( -15.02, z-score = 0.01, R) >consensus ______AUAUAGGGA_UAAACAAAUGUAUAAACUAUAUAAUUCCCAACUGCGCAGCAGCGGGCGUAAAAUUCAAUUCAUUAC___GCCAUAUUCUGCCCGUUGAGG ...........((((......((((((....))))))....))))..........(((((((((..............................)))))))))... ( -9.70 = -11.26 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:08 2011