| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,203,373 – 22,203,475 |
| Length | 102 |
| Max. P | 0.579574 |
| Location | 22,203,373 – 22,203,475 |
|---|---|
| Length | 102 |
| Sequences | 11 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 85.68 |
| Shannon entropy | 0.26775 |
| G+C content | 0.37009 |
| Mean single sequence MFE | -19.21 |
| Consensus MFE | -13.65 |
| Energy contribution | -13.93 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22203373 102 - 24543557 -UUGGUAAUUUCGUUAUUAGUCACGCUCUUUGCGCUUCAUUAAUGUUCAUUACACAUAAAUGAACCCACAUCGAUUGAUAUUUUUCAACUUCGUCGUCGCCAA------------ -.(((..((..((.((((((((.(((.....))).((((((.((((.......)))).))))))........))))))))...........))..))..))).------------ ( -20.10, z-score = -2.40, R) >droPer1.super_45 422099 114 + 618639 -UUGGUAAUUUCGUUAUUAGUCACGCUCUUUGCGCUUCAUUAAUGUUCAUUACACAUAAAUGAACCCACAUCGAUUGAUAUUUUUCAACUUGGUCGACGGCGGCAUCGUCGCCAU -.(((((((...)))))))(((.(((.....))).((((((.((((.......)))).)))))).....(((((((((......)))).))))).)))((((((...)))))).. ( -26.10, z-score = -1.60, R) >dp4.chrXR_group8 6286061 114 - 9212921 -UUGGUAAUUUCGUUAUUAGUCACGCUCUUUGCGCUUCAUUAAUGUUCAUUACACAUAAAUGAACCCACAUCGAUUGAUAUUUUUCAACUUGGUCGACGGCGGCAUCGUCGCCAU -.(((((((...)))))))(((.(((.....))).((((((.((((.......)))).)))))).....(((((((((......)))).))))).)))((((((...)))))).. ( -26.10, z-score = -1.60, R) >droEre2.scaffold_4784 21874735 101 - 25762168 -UUGGUAAUUUCGUUAUUAGUCGCGCUCUUUGCGCUUCAUUAAUGUUCAUUACACAUAAAUGAACCCACAUCGAUUGAUA-UUUUCAACUUCGUCGUCGCCAA------------ -.(((..((..((.((((((((((((.....))))((((((.((((.......)))).))))))........))))))))-..........))..))..))).------------ ( -24.20, z-score = -3.45, R) >droYak2.chr3L 22588515 102 - 24197627 -UUGGUAAUUUGGUUAUUAGUCACGCUCUUUGCGCUCCAUUAAUGUUCAUUACACAUAAAUGAACCCACAUCGAUUGAUAUUUUUCAACUUCGUCGUCGCCAA------------ -.(((..((((((.((((((((.(((.....)))..........(((((((.......))))))).......))))))))....)))).......))..))).------------ ( -19.01, z-score = -1.45, R) >droSec1.super_11 2133739 102 - 2888827 -UUGGUAAUUUCGUUAUUAGUCACGCUCUUUGCGCUUCAUUAAUGUCCAUUACACAUAAAUGAACCCACAUCGAUUGAUAUUUUUCAACUUCGUCGUCGCCAA------------ -.(((..((..((.((((((((.(((.....))).((((((.((((.......)))).))))))........))))))))...........))..))..))).------------ ( -20.10, z-score = -2.46, R) >droSim1.chr3L 21554307 102 - 22553184 -UUGGUAAUUUCGUUAUUAGUCACGCUCUUUGCGCUUCAUUAAUGUCCAUUACACAUAAAUGAACCCACAUCGAUUGAUAUUUUUCAACUUCGUCGUCGCCAA------------ -.(((..((..((.((((((((.(((.....))).((((((.((((.......)))).))))))........))))))))...........))..))..))).------------ ( -20.10, z-score = -2.46, R) >droVir3.scaffold_13049 14767758 90 - 25233164 -UUGGUAAUUUUGUUAUUAGUCACGCUCUUUGCGCUUCAUUAAUGUUCAUUACACACAAAUGAACCCACAUCGAUUGAUAUUUCUCGUCGU------------------------ -.............((((((((.(((.....)))..........(((((((.......))))))).......))))))))...........------------------------ ( -14.90, z-score = -0.95, R) >droMoj3.scaffold_6680 19546350 90 - 24764193 -UUGGUAAUUUUGUUAUUAGUCACGCUCUUUGCGCUUCAUUAAUGUUCAUUACACACAAAUGAACCCACAUCGAUUGAUAUUUCUCGUCGU------------------------ -.............((((((((.(((.....)))..........(((((((.......))))))).......))))))))...........------------------------ ( -14.90, z-score = -0.95, R) >droGri2.scaffold_15110 6611083 90 + 24565398 -UUGGUAAUUUUGUUAUUAGUCACGCUCUUUGCGCUUCAUUAAUGUUCAUUACACACAAACGAACCCACAUCGAUUGAUAUUUCUCAUCGU------------------------ -.............((((((((.(((.....)))..........((((.............)))).......))))))))...........------------------------ ( -10.92, z-score = 0.13, R) >droWil1.scaffold_180698 11300138 91 + 11422946 AUUGGUAAUUUCGUUAUUAGUCACGCUCUUUGCGCUUCAUUAAUGUUCAUUACACACAAAUGAACCCACAUCGAUUGAUAUUUUUCAUCGU------------------------ ..............((((((((.(((.....)))..........(((((((.......))))))).......))))))))...........------------------------ ( -14.90, z-score = -1.40, R) >consensus _UUGGUAAUUUCGUUAUUAGUCACGCUCUUUGCGCUUCAUUAAUGUUCAUUACACAUAAAUGAACCCACAUCGAUUGAUAUUUUUCAACUUCGUCGUCGCCAA____________ ..............((((((((.(((.....)))..........(((((((.......))))))).......))))))))................................... (-13.65 = -13.93 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:06 2011