| Sequence ID | dm3.chr3L |
|---|---|
| Location | 22,202,438 – 22,202,504 |
| Length | 66 |
| Max. P | 0.812561 |
| Location | 22,202,438 – 22,202,504 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 57.58 |
| Shannon entropy | 0.58437 |
| G+C content | 0.35354 |
| Mean single sequence MFE | -13.70 |
| Consensus MFE | -5.76 |
| Energy contribution | -4.43 |
| Covariance contribution | -1.33 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 22202438 66 - 24543557 UAAACAAUGAGUAGGUACUUGAAAGGGUUAGAGUUCUAAUCUAAUUAUAUAUGCUUGAAAUAGUGG ....((.....((((((..(((..(((((((....)))))))..)))....))))))......)). ( -10.40, z-score = -0.64, R) >droSec1.super_11 2132816 66 - 2888827 UAAACAAUGAGUAGGUACUUGAAAGGGUUGGAGUUCUAAUCCAAUCAAAGGUGCUUGAAGUAGUGA ...((.((...(((((((((((..(((((((....)))))))..)))..))))))))..)).)).. ( -18.40, z-score = -3.27, R) >droGri2.scaffold_15110 6610091 66 + 24565398 GAAAAUUUUGCUAAAGAGCUGAAUAAUGGAAAGUGCCAGCGUGCAUAAGUAUGCUAUAGAAAACGG ....((((.(((....))).))))...((......))(((((((....)))))))........... ( -12.30, z-score = -0.91, R) >consensus UAAACAAUGAGUAGGUACUUGAAAGGGUUAGAGUUCUAAUCUAAUUAAAUAUGCUUGAAAUAGUGG .......(((((....)))))....(((((((.......))))))).................... ( -5.76 = -4.43 + -1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:44:05 2011